PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c7aqoD_

Fold library id	PDB Header	Molecule	Title
c7aqoD_	4.50	PDB header: rna binding protein	Chain: D: PDB Molecule: tho complex subunit mft1;

Links to external resources
Added to library: Sat Dec 5 08:44:52 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P L S Q K Q I D Q V R T K V H Y S E V D T P F N K Y L D I L G K V T K L T G S I I N G T L S N D D S K I E K L T E Q N I S Q L K E S A H L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
S S S S S S
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F L D L Q S S I D T K K V A D E N W E T C Q Q E T L A K L E N L K D K L P D I K S I H S K L L L R I G K L Q G L Y D S V Q V I N R E V E G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S E G R T S L V V T R A E W E K E L G T D L V K F L I E I Y D D F S K G P K E L E S I N A S M K S D I E N V R Q E V S S Y K E K W L R D A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
T T T
S

. . . . . . . . . 220 . . . . .

Sequence I F G K I T S I F K E E L L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	L	S	Q	K	Q	I	D	Q	V	R	T	K	V	H	Y	S	E	V	D	T	P	F	N	K	Y	L	D	I	L	G	K	V	T	K	L	T	G	S	I	I	N	G	T	L	S	N	D	D	S	K	I	E	K	L	T	E	Q	N	I	S	Q	L	K	E	S	A	H	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T																											T				S	S	S	S	S	S					T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	L	D	L	Q	S	S	I	D	T	K	K	V	A	D	E	N	W	E	T	C	Q	Q	E	T	L	A	K	L	E	N	L	K	D	K	L	P	D	I	K	S	I	H	S	K	L	L	L	R	I	G	K	L	Q	G	L	Y	D	S	V	Q	V	I	N	R	E	V	E	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	E	G	R	T	S	L	V	V	T	R	A	E	W	E	K	E	L	G	T	D	L	V	K	F	L	I	E	I	Y	D	D	F	S	K	G	P	K	E	L	E	S	I	N	A	S	M	K	S	D	I	E	N	V	R	Q	E	V	S	S	Y	K	E	K	W	L	R	D	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S								T	T								T	T	T													S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Sequence	I	F	G	K	I	T	S	I	F	K	E	E	L	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)