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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7apxA_

Fold library idPDB HeaderMoleculeTitle
c7apxA_3.40PDB header: rna binding proteinChain: A: PDB Molecule: tho complex subunit 2,tho2;


Added to library: Sat Dec 5 08:54:19 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ALSQKVIPPASPSQASILTEEVIRNWPERSKTLCSDFTALESNDEKEDWLRTLFIELFDFIDVASFTNEL
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S


STT
S
S
S

S

 .........80.........90.........100.........110.........120.........130.........140
Sequence VNHERQVSQASIVGKMFIAVSSTVPNINDLTTISLCKLIPSLHEELFKFSWISSKLLNKEQTTLLRHLLK
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Known secondary structure (DSSP) TSSS
TTSSS


T

TTS

TTT


 .........150.........160.........170.........180.........190.........200.........210
Sequence KSKYELKKYNLLVENSVGYGQLVALLILAYYDPDNFSKVSAYLKEIYHIMGKYSLDSIRTLDVILNVSSQ
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Known secondary structure (DSSP) TT



B
STTTTT
TTGGGGTTB
T
 .........220.........230.........240.........250.........260.........270.........280
Sequence FITEGYKFFIALLRKSDSWPSSHVANNSNYSSLNEGGNMIAANIISFNLSQYNEEVDKENYERYMDMCCI
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Known secondary structure (DSSP) TSSSS

SS


SSSGGGTTS
B
TT

SSSSGGGT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LLKNGFVNFYSIWDNVKPEMEFLQEYIQNLETELEEESTKGVENPLAMAAALSKTQQDILLFGKIKLLER
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Known secondary structure (DSSP) TTTTSB
STTSSS
T




SSTTS



ST
 .........360.........370.........380.........390.........400.........410.........420
Sequence LLIHGCVIPVIHVLKQYPKVLYVSESLSRYLGRVFEYLLNPLYTSMTSSGESKDMATALMITRIDNGILA
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Known secondary structure (DSSP) TT
TT
GGGGGT
STTT
STT
TT




TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence HKPRLIHKYKTHEPFESLELNSSYVFYYSEWNSNLTPFASVNDLFENSHIYLSIIGPYLGRIPTLLSKIS
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Known secondary structure (DSSP)



S
SS

SSS
TTGGGS



SSGGGGGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence RIGVADIQKNHGSESLHVTIDKWIDYVRKFIFPATSLLQNNPIATSEVYELMKFFPFEKRYFIYNEMMTK
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Known secondary structure (DSSP) TSSSTTTTTT

S
TTS
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence LSQDILPLKVSFNKAEREAKSILKALSIDTIAKESRRFAKLISTNPLASLVPAVKQIENYDKVSELVVYT
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Known secondary structure (DSSP) SSTT
TT

SSSSS
ST
 .........640.........650.........660.........670.........680.........690.........700
Sequence TKYFNDFAYDVLQFVLLLRLTYNRPAVQFDGVNQAMWVQRLSIFIAGLAKNCPNMDISNIITYILKTLHN
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Known secondary structure (DSSP) GGG

SS

SB
SSSS
B
TT
TT


GGG
 .........710.........720.........730.........740.........750.........760.........770
Sequence GNIIAVSILKELIITVGGIRDLNEVNMKQLLMLNSGSPLKQYARHLIYDFRDDNSVISSRLTSFFTDQSA
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Known secondary structure (DSSP) T
TT




SS

TSSSTT

TTTTGGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence ISEIILLLYTLNLKANTQNSHYKILSTRCDEMNTLLWSFIELIKHCLKGKAFEENVLPFVELNNRFHLST
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Known secondary structure (DSSP) TS
S


SS

TS


 .........850.........860.........870.........880.........890.........900.........910
Sequence PWTFHIWRDYLDNQLNSNENFSIDELIEGAEFSDVDLTKISKDLFTTFWRLSLYDIHFDKSLYDERKNAL
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Known secondary structure (DSSP) T
TTS
TTTTTTT


TTT

TTS


STTT



T
 .........920.........930.........940.........950.........960.........970.........980
Sequence SKHLIQNQIKDILVTGISHQRAFKKTSEFISEKSNVWEDQIKIFLQNCVVPRVLFSPSDALFSSFFIFMA
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Known secondary structure (DSSP)

T

TTTSSSSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FRTENLMSILNTCITSNILKTLLFCCTSSEAGNLGLFFTDVLKKLEKMRLNGDFNDQASRKLYEWHSVIT
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Known secondary structure (DSSP) S
SSS
S
TTS

SS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence EQVIDLLSEKNYMSIRNGIEFMKHVTSVFPVVKAHIQLVYTTLEENLINEEREDIKLPSSALIGHLKARL
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Known secondary structure (DSSP) TS
SSGGG



TT

S
STTTTT




 .........1130.........1140.........1150.........1160.....
Sequence KDALELDEFCTLTEEEAEQKRIREMEXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP)
SSS


ST



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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