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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7aodA_

Fold library idPDB HeaderMoleculeTitle
c7aodA_4.50PDB header: transcriptionChain: A: PDB Molecule: dna-directed rna polymerase i subunit rpa1;


Added to library: Sat Feb 27 08:38:43 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MNIAQPVSSEIKSVKFGIYDVDDVEKISVKQIVNPVLLDNLNHPTNGGLYDLALGPYLKNSVCATCHLDE
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Known secondary structure (DSSP)

TT








B













B
TT
SB
TTSTT
TTT


TTT


TTT
S
T
 .........80.........90.........100.........110.........120.........130.........140
Sequence RYCPGHFGHIVLPIPAYHPLFFSQMYNLLRSTCLYCHHFKLSKVKVHLFFCRLKLLDYGLLNESEMVENV
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Known secondary structure (DSSP) TT





TTTTB
TTTSSBSS
TT
SGGG

 .........150.........160.........170.........180.........190.........200.........210
Sequence SLAKDAATLMRIRDEFVAKSIADSRQLTTLLLHERKKVVRAFYHAISSRKQCDNCQSFSPNFRKEGFAKI
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Known secondary structure (DSSP)





TT

B
SSS
SB






TTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence FEIPLSGKNLQFKYMTSTEVRNHLRRLFVKENVVLSRLYPASADMFFLQNIAVPPTRFRPNIQNELLTRI
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S




SGGG

TTT


 .........290.........300.........310.........320.........330.........340.........350
Sequence LQSSIQIASLSKDSTVEERRSRAFELLINAFVQLQHDVNSLIDSNRNPPPGIKQILEKKEGLFRKHMMGK
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Known secondary structure (DSSP)


SSS




TTSSSTTTTTTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence RVNYAARSVISPDPNIETNEIGVPPVFATKLTYPEPVTLYNFNEMRNAVINGPHKWPGASHIQNEDGTLI
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Known secondary structure (DSSP)

SS

SSS
SS




B

SST
TTSTT

SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence SLMPLTIEQRTALANQLLTPQSNLISSPYSYSRLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKAR
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Known secondary structure (DSSP)

SSS
TSSS


SSTTSSSS
TTGGG




TT

SS

SGGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence ILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTNARSEAQFIANTDSQYLVPTSGDPLRGLIQDHVVM
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Known secondary structure (DSSP)
SS
SS
TT

SSS




STSBGGG

B
SSSS
B

S

 .........570.........580.........590.........600.........610.........620.........630
Sequence GVWLTCKDTFYTRDEYQQLLFQALKPDETGMYGRIKTLPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGL
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Known secondary structure (DSSP) STT

B


S








SB
SSS
BB
T

TT



 .........640.........650.........660.........670.........680.........690.........700
Sequence NLKSKAKVPGKYWSPDSEEGSVLFDDGELLCGILDKSSFGASAFGLVHSVHELYGPDIAGRLLSVLSRLF
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Known secondary structure (DSSP)

SS
GGGTSTT
S
STTS


TTTSSS
SSSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence TAYAQMRGFTCRMDDLRLDEQGDNWRRQLLENGKSFGLEAASEYVGLSTDSPIALLNANLEEVYRDDEKL
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Known secondary structure (DSSP) S




STTTSB
GGGS

TT

TTSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence QGLDAAMKGKMNGLTSSIINKCIPDGLLTKFPYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPL
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Known secondary structure (DSSP) TTTTBSS
TTT
TSSS

T



SSSS
S

 .........850.........860.........870.........880.........890.........900.........910
Sequence MVSGKSLPSFVPYETSAKSGGFIASRFLTGIAPQEYYFHCMAGREGLIDTGYLQRCLMKHLEGLCVQYDH
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Known secondary structure (DSSP)
TT

SSTTS
TT

SGGGTT


TTT




GGGGTTTTTTS

B

TTS
 .........920.........930.........940.........950.........960.........970.........980
Sequence TVRDSDGSIVQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQKYKVKSVLSAVDSETASSYAKKALKKPY
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Known secondary structure (DSSP)

B
TTS
BS
SSTTTTT
SGGGGSSTT
S
TTSB
SSSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence KYDPVLDKYPPSRYLGSVSEKFQRAVDEYTQKNPDKLIAESKLDDSLLNESKFKALMQLRYQQSLVDPGE
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Known secondary structure (DSSP) SS

S
TTTBTT




SSS


GGGTSSS

TT


TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence SVGVLASQSIGEPSTQMTLNTNVTLGIPRLREIIMTASANIQTPTMTLRLNDGVSDKRASAFCKEVNKLV
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Known secondary structure (DSSP) B









STT

SS
SS

TT



 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LSEVVRQVRVTEKTYAIRLDLYSRDEYQDEYGVLQEEIESTFSNRFLKILNRIIKSYLAKSKQNCKHLDF
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Known secondary structure (DSSP) GGGGB





B

S



T



 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence DYVNGEWATVELVFPINTEKLLMVSLVEKACSETVIHEIPGITRCFSKPDTVPKVITEGVNLKAIWEFYN
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Known secondary structure (DSSP)
TTT





TTS



TT


TT







TT

S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence EISMNDIYTNDIAAILRIYGVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMGIE
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Known secondary structure (DSSP)


TT
TTT



TTTSS


TTT
 .........1340.........1350.........1360.........1370.........1380....
Sequence YNTSPFAKMSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIFT
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Known secondary structure (DSSP) T
S
TTTT



B


STT


SSGGGTS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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