Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7am1A_

Fold library idPDB HeaderMoleculeTitle
c7am1A_1.90PDB header: rna binding proteinChain: A: PDB Molecule: protein ssd1;


Added to library: Sat Aug 14 08:33:47 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PDSSLFAPYLPQANIPELIQEGRLVAGILRVNKKNRSDAWVSTDGALDADIYICGSKDRNRALEGDLVAV
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)










TTTS

SSSTT
SSSSSS
TT

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence ELLVVDDVWNDSDSLSVRRRSSLKQRPTQKKNDDVEVEGQSLLLVEEEKPLYAGHVVAVLDRIPGQLFSG
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP)





S




S





TSSS






S


TT

 .........150.........160.........170.........180.........190.........200.........210
Sequence TLGLPKIAWFKPTDKKVPLIAIPTELAPKDFVENADKYSEKLFVASIKRWPITSLHPFGILVSELGDIHD
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)


SSTTS

TTTS
GGGTT
GGGGTT

TT
SS
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence PDTEIDSILRDNNFLSNEYLDQKNPQKEKPSFQPLPLTAESLEYRRNFTDTNEYNIFAISELGWVSEFAL
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) TT



TTB
SS
SSSB
TT






S

TTT



TTS


 .........290.........300.........310.........320.........330.........340.........350
Sequence HVRNNGNGTLELGCHVVDVTSHIEEGSSVDRRARKRSSAVFMPQKLVNLLPQSFNDELSLAPGKESATLS
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)
SSS
GGGGS
TTS
B

SS

SS
S

TT

 .........360.........370.........380.........390.........400.........410.........420
Sequence VVYTLDSSTLRIKSTWVGESTISPSNILSLEQLDEKLSTGSPTSYLSTVQEIARSFYARRINDPEATLLP
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) TTT



SSS
TTSTT
TT

S
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence TLSLLESLDDEKVKVDLNILDRTLGFVVINEIKRKVNSTVAEKIYTKLGDLALLRRQMQPIATKMASFRK
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP)




SS

SSTT


GGG
B



 .........500.........510.........520.........530.........540.........550.........560
Sequence KIQNFGYNFDTNTADELIKGVLKIKDDDVRVGIEILLFKTMPRARYFIAGKVDPDQYGHYALNLPIYTHF
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) T




SST


T



GGGS
GGG

BGGGTBSS



 .........570.........580.........590.........600.........610.........620.........630
Sequence TAPMRRYADHVVHRQLKAVIHDTPYTEDMEALKITSEYCNFKKDCAYQAQEQAIHLLLCKTINDMGNTTG
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) S
TTTBST





TTTTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence QLLTMATVLQVYESSFDVFIPEFGIEKRVHGDQLPLIKAEFDGTNRVLELHWQPGVDSATFIPADEKNPK
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) S
SSTTTTGGGS
TTTT
TT

TTT


GGGSSTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence SYRNSIKNKFRSTAAEIANIELDKEAESEPLISDPLSKELSDLHLTVPNLRLPSAQNALEKFISTTETRI
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) SGGGG
S





T

SS
TT












TTS
 .........780.........790.........800.........810
Sequence ENDNYIQEIHELQKIPILLRAEVGMALPCLTVRALNPFMK
Predicted secondary structure





















SS confidence







































Known secondary structure (DSSP) TTTT

SSSS


TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D