PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c7agmB_

Fold library id	PDB Header	Molecule	Title
c7agmB_	1.35	PDB header: sugar binding protein	Chain: B: PDB Molecule: n-acetylmuramoyl-l-alanine amidase;

Links to external resources
Added to library: Sat Nov 21 09:05:23 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S N I A G M I V F L D P G H N G A N D A S I G R Q V P T G R G G T K N C Q E S G T A T D D G Y P E H S F T W D T T L R V R A A L T A L G V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S S
G G G G S
S S S S S
B
T T
B T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T A M S R G N D N A L G P C V D E R A A M A N S L R P H A I V S I H A D G G P P T G R G F H V L Y S S P P L N A A Q S G P S V Q F A K V M R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S S
S
T T
S B S S
S S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D Q L A A S G I P P A T Y I G Q G G L N P R S D I A G L N L A Q F P S V L V E C G N M K N P V D S A L M K S P E G R Q K Y A D A I V R G I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B
S S S S B T T S
T
S S
T T S S

. . . . . .

Sequence G F L G S Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	N	I	A	G	M	I	V	F	L	D	P	G	H	N	G	A	N	D	A	S	I	G	R	Q	V	P	T	G	R	G	G	T	K	N	C	Q	E	S	G	T	A	T	D	D	G	Y	P	E	H	S	F	T	W	D	T	T	L	R	V	R	A	A	L	T	A	L	G	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T									S		S	S			G	G	G	G	S					S	S	S	S				S						B		T	T			B																			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	A	M	S	R	G	N	D	N	A	L	G	P	C	V	D	E	R	A	A	M	A	N	S	L	R	P	H	A	I	V	S	I	H	A	D	G	G	P	P	T	G	R	G	F	H	V	L	Y	S	S	P	P	L	N	A	A	Q	S	G	P	S	V	Q	F	A	K	V	M	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S		S		S	S	S																		S												T	T			S	B						S	S		S	S					T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	Q	L	A	A	S	G	I	P	P	A	T	Y	I	G	Q	G	G	L	N	P	R	S	D	I	A	G	L	N	L	A	Q	F	P	S	V	L	V	E	C	G	N	M	K	N	P	V	D	S	A	L	M	K	S	P	E	G	R	Q	K	Y	A	D	A	I	V	R	G	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T			B		S	S	S	S	B	T	T					S							T		S	S										T	T	S									S
	.	.	.	.	.	.
Sequence	G	F	L	G	S	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)