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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7abiA_

Fold library idPDB HeaderMoleculeTitle
c7abiA_8.00PDB header: splicingChain: A: PDB Molecule: pre-mrna-processing-splicing factor 8;


Added to library: Sat Feb 13 09:43:29 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence PEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVPVLYHITGAISFVNEI
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Known secondary structure (DSSP)

T
SS

SSTTTSS
GGGT
STTS


TT




TT
S




 .........80.........90.........100.........110.........120.........130.........140
Sequence PWVIEPVYISQWGSMWIMMRREKRDRRHFKRMRFPPFDDEEPPLDYADNILDVEPLEAIQLELDPEEDAP
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Known secondary structure (DSSP)











SSSS
TT




STTTS







S




TTTSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VLDWFYDHQPLRDSRKYVNGSTYQRWQFTLPMMSTLYRLANQLLTDLVDDNYFYLFDLKAFFTSKALNMA
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Known secondary structure (DSSP) STTTTT
SSTTT


SSS
TTTTS


SSSTT




SSTT
TTTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence IPGGPKFEPLVRDINLQDEDWNEFNDINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKT
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Known secondary structure (DSSP)
SS
S


S
SS


SSSSTT
STT
GGGS

SS


SSSSSSSS

S















 .........290.........300.........310.........320.........330.........340.........350
Sequence EDPDLPAFYFDPLINPISHRHSVKSQEPLPDDDEEFELPEFVEPFLKDTPLYTDNTANGIALLWAPRPFN
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Known secondary structure (DSSP)
SSSS
SS


TTS






SS

SS

TTT



S

SS



SS
TTST

TTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence LRSGRTRRALDIPLVKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFKATKFF
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Known secondary structure (DSSP) SS



STT

SSTTT

S


TT










STTSTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence QSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREVLR
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Known secondary structure (DSSP)
TTT
TT

TTT

SSS

TTTGGGTS

 .........500.........510.........520.........530.........540.........550.........560
Sequence LTKLVVDSHVQYRLGNVDAFQLADGLQYIFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVG
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Known secondary structure (DSSP) TT
TTTSS
TTS
STTSSSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence KGPGCGFWAAGWRVWLFFMRGITPLLERWLGNLLARVESHFDLELRAAVMHDILDMMPEGIKQNKARTIL
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Known secondary structure (DSSP) SSS



TT


SSSTTS



S
 .........640.........650.........660.........670.........680.........690.........700
Sequence QHLSEAWRCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLGRLT
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Known secondary structure (DSSP) TTSS



S

STS


SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence RLYLKAEQERQHNYLKDGPYITAEEAVAVYTTTVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAY
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Known secondary structure (DSSP) S


S
T


B



TT
TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence SVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLVPVYDVEPLEKITDA
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Known secondary structure (DSSP)
SSS


SS







B

TTS
B



 .........850.........860.........870.........880.........890.........900.........910
Sequence YLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQGINNLQDVWETSEGECNVMLESRFEKMYEKIDL
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Known secondary structure (DSSP) T
S
SSS

STT
SSTSTT
S

TTS







TTT


 .........920.........930.........940.........950.........960.........970.........980
Sequence TLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASE
Predicted secondary structure






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Known secondary structure (DSSP) B
TTS


SS



SS

SSSTTS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence MAGPPQMPNDFLSFQDIATEAAHPIRLFCRYIDRIHIFFRFTADEARDLIQRYLTEHPDPNNENIVGYNN
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Known secondary structure (DSSP)

SSS


SS

SSSS

SS


S

SSSGGGSS


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KKCWPRDARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRILPKC
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Known secondary structure (DSSP)

SSTTTSS



TS
TTT



TTT


SSS




SSS
GG
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence RTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGL
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Known secondary structure (DSSP) GT





SSS



TTTT



STTSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence MTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDL
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Known secondary structure (DSSP) TTTT

SS

S


S
TTTTS





S

B

TTS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence RWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAIAQNRRLTLEDLED
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Known secondary structure (DSSP)

B
SSSB





SS

B



STTSS

T



S
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGG
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Known secondary structure (DSSP) S
S
SSS
SSTGGG


SS


S
SS







TTTT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence VEGILEHTLFKGTYFPTWEGLFWQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLI
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Known secondary structure (DSSP) TTGGGG


SSSS



TSSSTTSTT




STT




S

 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence QIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFASYKWNVSRPSL
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Known secondary structure (DSSP) S
STTTTTTTTTT

S




TTGGG
SS



S
SS





 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence LADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSA
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Known secondary structure (DSSP) TT






S


S





TTS

SSSS


SS


TTTT

 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence YGNWFPGSKPLIQQAMAKIMKANPALYVLRERIRKGLQLYSGELFSNQIIWFVDDTNVYRVTIHKTFEGN
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Known secondary structure (DSSP)

SS
TT
T



TTSSS



GGGSS



TT

 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKG
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Known secondary structure (DSSP)




TTT

STTTTT
S
TS
STT


S
SSTT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence MLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLI
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Known secondary structure (DSSP)

TSS
TTS

B

SS


TT
T

S

SSTTS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence LILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWIKVEVQLKDLILADYGKKNNVNVASLTQSEI
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Known secondary structure (DSSP)

SSS

B

SS
SS
B

TS
STT

 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence RDIILGMEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDIKETGYTYILPKNVLKKFI
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Known secondary structure (DSSP) T




SSSS







SSSTTTTGGG







S
S
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence CISDLRAQIAGYLYGVSPPDNPQVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEMEPLGWIHTQPNES
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Known secondary structure (DSSP)

SSS



TT
TT


B
SS








STTSSSSS

 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence PQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSH
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Known secondary structure (DSSP) SS


SSS
TTT


TTS






SSS
TT

GGG
 .........2110.........2120.........2130.........2140.........2150.........2160...
Sequence YERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFA
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Known secondary structure (DSSP)

B
SSS


SSS
SB
SS

TT

TT



SS



TT
TTT
S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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