Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7a5pU_

Fold library idPDB HeaderMoleculeTitle
c7a5pU_5.00PDB header: splicingChain: U: PDB Molecule: intron-binding protein aquarius;


Added to library: Sat Oct 17 09:07:06 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NAEFVTQLACKYWAPHIKKKSPFDIKVIEDIYEKEIVKSRFAIRKIXLLEFSQYLENYLWXNYSPEVSSK
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)
T
TT
S





TTTTTTS
TTTTTTT

TTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence AYLXSICCXVNEKFRENVPAWEIFKKKPDHFPFFFKHILKAALAETDGEFSLHEQTVLLLFLDHCFNSLE
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TTS

SS
TTTS
TTSSS
TTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence VDLIRSQVQQLISLPXWXGLQLARLELELKKTPKLRKFWNLIKKNDEKXDPEAREQAYQERRFLSQLIQK
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) SSGGGGGGS
STTTS
T
 .........220.........230.........240.........250.........260.........270.........280
Sequence FISVLKSVPLSEPVTXDKVHYCERFIELXIDLEALLPTRRWFNTILDDSHLLVHCYLSNLVRREEDGHLF
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TS
SSS


STTTS
TTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence SQLLDXLKFYTGFEINDQTGNALTENEXTTIHYDRITSLQRAAFAHFPELYDFALSNVAEVDTRESLVKF
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) T
SB
TTT

B


GGGS
GGGT
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence FGPLSSNTLHQVASYLCLLPTLPKNEDTTFDKEFLLELLVSRHERRISQIQQLNQXPLYPTEKIIWDENI
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TTS
TTSS



TT


SS
S



T

SS

T
TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence VPTEYYSGEGCLALPKLNLQFLTLHDYLLRNFNLFRLESTYEIRQDIEDSVSRXKPWQSEYGGVVFGGWA
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP) S

TT

SSS

SS



S

SST


SSS
SSS

 .........500.........510.........520.........530.........540.........550.........560
Sequence RXAQPIVAFTVVEVAKPNIGENWPTRVRADVTINLNVRDHIKDEWEGLRKHDVCFLITVRPTKPYGTKFD
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) SS



SS

S
S


S
TT

TT



S
TT



 .........570.........580.........590.........600.........610.........620.........630
Sequence RRRPFIEQVGLVYVRGCEIQGXLDDKGRVIEPRPNLRGESRTFRVFLDPNQYQQDXTNTIQNGAEDVYET
Predicted secondary structure












































SS confidence





































































Known secondary structure (DSSP) TTS
TB
TTS
B







SS




GGG
 .........640.........650.........660.........670.........680.........690.........700
Sequence FNIIXRRKPKENNFKAVLETIRNLXNTDCVVPDWLHDIILGYGDPSSAHYSKXPNQIATLDFNDTFLSIE
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)




GGG

S




TT
S
TTTTSGGG
TT

S
TTS
SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence HLKASFPGHNVKVTVEDPALQIPPFRITFPVEAKTLIVEPHVIPNRGPYPYNQPKRNTIQFTHTQIEAIR
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP) T
TTSS


TTT

SS




S






S
GGGS








 .........780.........790.........800.........810.........820.........830.........840
Sequence AGXQPGLTXVVGPPGTGKTDVAVQIISNIYHNFPEQRTLIVTHSNQALNQLFEKIXALDIDERHLLRLGH
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) SS

TTS

TT


SSTSS

GGG

 .........850.........860.........870.........880.........890.........900.........910
Sequence FSRYGRVNYVLARRIELLEEVKRLQKSLGVPGDASYTCETAGYFFLYQVXSRWEEYISKVKNPDVTEVST
Predicted secondary structure




SS confidence





































































Known secondary structure (DSSP)

TT



S


T



 .........920.........930.........940.........950.........960.........970.........980
Sequence FFPFHEYFANAPQPIFKGRSYEEDXEIAEGCFRHIKKIFTQLEEFRASELLRSGLDRSKYLLVKEAKIIA
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) T
TTTTTTTTSSS
S

SS
TT

STT
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence XTCTHAALKRHDLVKLGFKYDNILXEEAAQILEIETFIPLLLQNPQDGFSRLKRWIXIGDHHQLPPVIKN
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP)
SST


SSSGGGSBGGGGSS

BTTB




TTS




SS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence XAFQKYSNXEQSLFTRFVRVGVPTVDLDAQGRARASLCNLYNWRYKNLGNLPHVQLLPEFSTANAGLLYD
Predicted secondary structure













































SS confidence





































































Known secondary structure (DSSP) T
TT
BT





SS
TTSSS


GGGTS

TTBSSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence FQLINVEDFQGVGESEPNPYFYQNLGEAEYVVALFXYXCLLGYPADKISILTTYNGQKHLIRDIINRRCG
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP)


BTTBSSB
SSTT

B
T

GGGS
TS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence NNPLIGRPNKVTTVDRFQGQQNDYILLSLVRTRAVGHLRDVRRLVVAXSRARLGLYIFARVSLFQNCFEL
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) S
TT



S
SGGGTT




SS

GGGGSTTS
T
GGG
 .........1270.........1280.........1290...
Sequence TPAFSQLTARPLHLHIIVQIIKNXPQXANFVYN
Predicted secondary structure










SS confidence
































Known secondary structure (DSSP) TTS
SS


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D