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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c7a5pM_

Fold library idPDB HeaderMoleculeTitle
c7a5pM_5.00PDB header: splicingChain: M: PDB Molecule: pre-mrna-splicing factor syf1;


Added to library: Sat Oct 17 09:01:52 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTD
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Known secondary structure (DSSP)

TT

TTTTTTTT
S

S
SS
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PAYEDVNNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSH
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Known secondary structure (DSSP)
SS


SSS

TTTTSS

TTSTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PLPETAVRGYRRFLKLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLIS
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Known secondary structure (DSSP)
SSTTS

TTSSSSTT

SSSSTTSS

SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence QNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSY
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Known secondary structure (DSSP) TSS


S


SS

STTTSSS

SS

SS
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence AQFEESMIADVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIINTYTEAVQT
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Known secondary structure (DSSP)

SS
STTTTT
S
TTSTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALR
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Known secondary structure (DSSP) SSS

SS
STTTSSTTTSTT

STTS

TTT
S
 .........430.........440.........450.........460.........470.........480.........490
Sequence LLRKATALPRVYKSLKVWSMLAQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLF
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Known secondary structure (DSSP)




TT
S


TTT

TTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence KWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYER
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Known secondary structure (DSSP)
TS
TT
SST
SS


SS

SSTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence ATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY
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Known secondary structure (DSSP) TTS
TT

TTSS
STTTS
TTTTS
S
 .........640.........650.........660.........670..
Sequence SFCSQICDPRTTGAFWQTWKDFEVRHTIKEMLRIRRSVQATY
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Known secondary structure (DSSP) SS
TTT

ST

GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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