Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6zlzB_

Fold library idPDB HeaderMoleculeTitle
c6zlzB_3.52PDB header: virus like particleChain: B: PDB Molecule: capsid protein vp1;


Added to library: Sat Aug 8 08:22:35 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence CIPKPGCCPNVASVPKLLVKGGVEVLSVVTGEDSITQIELYLNPRMGVNSPDLPTTSNWYTYTYDLQPKG
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP)



TTTS












SGGGTTS


TT


BSS


TT
TTTGGGTTB






S
 .........80.........90.........100.........110.........120.........130.........140
Sequence SSPDQPIKENLPAYSVARVSLPMLNEDITCDTLQMWEAISVKTEVVGISSLINVHYWDMKRVHDYGAGIP
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) SSS



GGG

B





GGGT

S
GGGGG



TTB
BSSTT

B

 .........150.........160.........170.........180.........190.........200.........210
Sequence VSGVNYHMFAIGGEPLDLQGLVLDYQTQYPKTTNGGPITIETVLGRKMTPKNQGLDPQAKAKLDKDGNYP
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP) S
S
SS



S
TT





SSSS


SS


GGGGS

TT


SSS
SB
 .........220.........230.........240.........250.........260.........270.........280
Sequence IEVWCPDPSKNENSRYYGSIQTGSQTPTVLQFSNTLTTVLLDENGVGPLCKGDGLFISCADIVGFLFKTS
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) TTT
TTT
SS

SS







SS




TTS


B
GGG

BTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence GKMALHGLPRYFNVTLRKRWVKNPYPVVNLINSLFSNLMPKVSGQPMEGKDNQVEEVRIYEGSEQLPGDP
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP) S





SS
S




S

SSTT









S




S
T
 .........360.........370.
Sequence DIVRFLDKFGQEKTVYPKPSV
Predicted secondary structure







SS confidence




















Known secondary structure (DSSP) T


TTS








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D