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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6zh8A_

Fold library idPDB HeaderMoleculeTitle
c6zh8A_4.14PDB header: dna binding proteinChain: A: PDB Molecule: dna-dependent protein kinase catalytic subunit,dna-pkcs;


Added to library: Sat Oct 24 09:51:32 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RCSLLRLQETLSAADRCGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFSRDFGLLVFVRKSLNSIEF
Predicted secondary structure























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Known secondary structure (DSSP)
TS
STTSSSS



STTS

 .........80.........90.........100.........110.........120.........130.........140
Sequence RECREEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKDLDLLIKLLQTFRSSRLMDEFKIGELFSKFY
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP) T
S

SSS




SSTT

 .........150.........160.........170.........180.........190.........200.........210
Sequence GELALKKKIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMLPVLAGCLKGLSSLLCNFT
Predicted secondary structure







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Known secondary structure (DSSP)


SSSS

T

SS
S


TTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence KSMEEDPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTCLLDNYVSLFEVLLKWCAHTN
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP)

TTSTTTTTTTSSS



S
TTSSGGGGSSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence VELKKAALSALESFLKQVSNMVAKNAEMHKNKLQYFMEQFYGIIRNVDSNNKELSIAIRGYGLFAGPCKV
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP) TTTT
SSTTS

SSTTSST
 .........360.........370.........380.........390.........400.........410.........420
Sequence INAKDVDFMYVELIQRCKQMFLTQTDTGDDRVYQMPSFLQSVASVLLYLDTVPEVYTPVLEHLVVMQIDS
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) TSS

S

SSSSGGGGGG
S


TTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence FPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSKPVVLPWKVPTYKDYVDLFRHLL
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) TTTS
TT
STS









GGGT
 .........500.........510.........520.........530.........540.........550.........560
Sequence SSDQMMDSILADEAFFSVNSSSESLNHLLYDEFVKSVLKIVEKLDLTLEIQMIPTSDPAANLHPAKPKDF
Predicted secondary structure





















SS confidence





































































Known secondary structure (DSSP) TTTSS



SS

SST









STTSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence SAFINLVEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIKYFEGVSPDP
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) S

TTTTT

S
TT
STT



 .........640.........650.........660.........670.........680.........690.........700
Sequence EKYSCFALFVKFGKEVAVKMKQYKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAEV
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) GGG

SSTS
TT
GGGTTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence GLNALEEWSIYIDRHVMQPYYKDILPCLDGYLKTSALSLEEIRIRVVQMLGSLGGQINKNLLTVTSSDEM
Predicted secondary structure























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Known secondary structure (DSSP) S
GGGGGGGTTTTT

S
GGGTT
TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence MKSYVAWDREKRLSFAVPFREMKPVIFLDVFLPRVTELALTASDRQTKVAACELLHSMVMFMLGKATQMG
Predicted secondary structure

































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Known secondary structure (DSSP)

TTS
SSSS





SS


GGGG
TTSS

 .........850.........860.........870.........880.........890.........900.........910
Sequence APPMYQLYKRTFPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQDTVALLEAILDGIVDPVDST
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Known secondary structure (DSSP)



T
S
TSTT

SGGGGT
SSS
 .........920.........930.........940.........950.........960.........970.........980
Sequence LRDFCGRCIREFLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALHPNAFKRLGASLAFNNIYREFREEES
Predicted secondary structure










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Known secondary structure (DSSP) S
GGGGGTSSSST
S
TTTGGG
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LVEQFVFEALVIYMESLALAHADEKSLGTIQQCCDAIDHLCRIIEKKHVSLNKAKKRRLPRGFPPSASLC
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) TTS
TTSTGGGGSS






TT
TT
SS

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LLDLVKWLLAHCGRPQTECRHKSIELFYKFVPLLPGNRSPNLWLKDVLKEEGVSFLINTFEGGGCGQPSG
Predicted secondary structure






















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Known secondary structure (DSSP) TTSS
S
TTTSTT


S
S
SSSSS
S
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence ILAQPTLLYLRGPFSLQATLCWLDLLLAALECYNTFIGERTVGALQVLGTEAQSSLLKAVAFFLESIAMH
Predicted secondary structure















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Known secondary structure (DSSP) TTT
SSSSS

S
TTSTTT
S
GGGGTTSSS


S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence DIIAAEKCTGAAGNRTSPQEGERYNYSKCTVVVRIMEFTTTLLNTSPEGWKLLKKDLCNTHLMRVLVQTL
Predicted secondary structure
















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Known secondary structure (DSSP) SS

TTT


SSSS
S
SS
SSGGG
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence CEPASIGFNIGDVQVMAHLPDVCVNLMKALKMSPYKDILETHLREKITAQSIEELCAVNLYGPDAQVDRS
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Known secondary structure (DSSP)
GGGT


SS
SSTTT

T
SS
SS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence RLAAVVSACKQLHRAGLLHNILPSQSTDLHHSVGTELLSLVYKGIAPGDERQCLPSLDLSCKQLASGLLE
Predicted secondary structure

















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Known secondary structure (DSSP) TTS


SSSS





TS



SSS
S



SS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LAFAFGGLCERLVSLLLNPAVLSTASVIHFSHGEYFYSLFSETINTELLKNLDLAVLELMQSSVDNTKMV
Predicted secondary structure







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Known secondary structure (DSSP) SS
TT


B








B
STTTTTT
S
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence SAVLNGMLDQSFRERANQKHQGLKLATTILQHWKKCDSWWAKDSPLETKMAVLALLAKILQIDSSVSFNT
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Known secondary structure (DSSP) TTTT

TTTTTTTS
TTS
S
STT
SS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence SHGSFPEVFTTYISLLADTKLDLHLKGQAVTLLPFFTSLTGGSLEELRRVLEQLIVAHFPMQSREFPPGT
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Known secondary structure (DSSP) SSS
T
SS

TTGGGGGG

STTS
SSSTTS
TT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence PRFNNYVDCMKKFLDALELSQSPMLLELMTEVLCREQQHVMEELFQSSFRRIARRGSCVTQVGLLESVYE
Predicted secondary structure




SS confidence





































































Known secondary structure (DSSP) T
TTSTT
TTSS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence MFRKDDPRLSFTRQSFVDRSLLTLLWHCSLDALREFFSTIVVDAIDVLKSRFTKLNESTFDTQITKKMGY
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP)



S
TTSS
TTTTT


SSS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence YKILDVMYSRLPKDDVHAKESKINQVFHGSCITEGNELTKTLIKLCYDAFTENMAGENQLLERRRLYHCA
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Known secondary structure (DSSP) TT

SSTTTTS
SSS
SSS



SSS

SSSTT
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence AYNCAISVICCVFNELKFYQGFLFSEKPEKNLLIFENLIDLKRMDELNRHECMAPLTALVKHMHRSLPRD
Predicted secondary structure





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Known secondary structure (DSSP)


SSS




SS

S
S









SSSS
SS



 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence LPSWMKFLHGKLGNPIVPLNIRLFLAKLVINTEEVFRPYAKHWLSPLLQLAASENNGGEGIHYMVVEIVA
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Known secondary structure (DSSP)

STTS
ST

TTTGGGTSSS

SSSSS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence TILSWTGLATPTGVPKDEVLANRLLNFLMKHVFHPKRAVFRHNLEIIKTLVECWKDCLSIPYRLIFEKFS
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Known secondary structure (DSSP) TTTTT



SSS


SSGGG



S
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence GKDPNSKDNSVGIQLLGIVMANDLPPYDPQCGIQSSEYFQALVNNMSFVRYKEVYAAAAEVLGLILRYVM
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SS confidence





































































Known secondary structure (DSSP)
S

SSS
TTT

TT
S
SS


SSGGG

S
TTT
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence ERKNILEESLCELVAKQLKQHQNTMEDKFIVCLNKVTKSFPPLADRFMNAVFFLLPKFHGVLKTLCLEVV
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Known secondary structure (DSSP) S

SSTTTT

GGGGGGGTTT

S
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence LCRVEGMTELYFQLKSKDFVQVMRHRDDERQKVCLDIIYKMMPKLKPVELRELLNPVVEFVSHPSTTCRE
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Known secondary structure (DSSP) TT

S
STT
SS
TTS

TTTT
TTSS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence QMYNILMWIHDNYRDPESETDNDSQEIFKLAKDVLIQGLIDENPGLQLIIRNFWSHETRLPSNTLDRLLA
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Known secondary structure (DSSP) S


S

TTTGGG
S
STTTS
SS
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence LNSLYSPKIEVHFLSLATNFLLEMTSMSPDYPNPMFEHPLSECEFQEYTIDSDWRQVVLYRSYRHGDLPD
Predicted secondary structure





































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Known secondary structure (DSSP) S

TTTTTTTTSSGGGG
TTTTS
SSSS
SSS














S

SS

 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence IQIKHSSLITPLQAVAQRDPIIAKQLFSSLFSGILKEMDKFKTLSEKNNITQKLLQDFNRFLNTTFSFFP
Predicted secondary structure







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Known secondary structure (DSSP)



TT
S
S
SS

 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence PFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLEEALLRLLPLPPDVLRWVELAKLYRSIGE
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) STTS





T





 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence YDVLRGIFTSEIGTKQITQSALLAEARSDYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELASLDCYNHL
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TT

ST





SS


S
 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence AEWKSLEYCSTASIDSENPPDLNKIWSEPFYQETYLPYMIRSKLKLLLQGEADQSLLTFIDKAMHGELQK
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Known secondary structure (DSSP)

TTTS
SS
SS


SSSSSSS
STTTTTT


SSS
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence AILELHYSQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEIQEFISFI
Predicted secondary structure




SS confidence





































































Known secondary structure (DSSP) T
S
SS
T
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence SKQGNLSSQVPLKRLLNTWTNRYPDAKMDPMNIWDDIITNRCFFLSKIEEKLDISSLIRSCKFSMKMKMI
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) STSS



SSSS


TT
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence DSARKQNNFSLAMKLLKELHKESKTRDDWLVSWVQSYCRLSHCRSRSQGCSEQVLTVLKTVSLLDENNVS
Predicted secondary structure














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Known secondary structure (DSSP) TT
TTSSS


SSS

STTSS
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence SYLSKNILAFRDQNILLGTTYRIIANALSSEPACLAEIEEDKARRILELSGSSSEDSEKVIAGLYQRAFQ
Predicted secondary structure



SS confidence





































































Known secondary structure (DSSP) TTTSS
TTTS
TS
SSS
S
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence HLSEAVQAAEEEAPAAGVIDAYMTLADFCDQQLRKEEENQAYPALVVEKMLKALKLNSNEARLKFPRLLQ
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) S



S




TT
 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence IIERYPEETLSLMTKEISSVPCWQFISWISHMVALLDKDQAVAVQHSVEEITDNYPQAIVYPFIISSESY
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Known secondary structure (DSSP) SS
SSSSSSTTTS
TT

GGGTTSSTT
TTSSTTSSTS
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence SFKDTSTGHKNKEFVARIKSKLDQGGVIQDFINALDQLSNPELLFKDWSNDVRAELAKTPVNKKNIEKMY
Predicted secondary structure




SS confidence





































































Known secondary structure (DSSP)

SSSSSTTS
GGGS
TTTS
S
SSSS

 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence ERMYAALGDPKAPGLGAFRRKFIQTFGKEFDKHFGKGGSKLLRMKLSDFNDITNMLLLKMNKDSKPPGNL
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) SSSTT
TT

STTTTTTT
SSGGGTT


SST


S


 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence KECSPWMSDFKVEFLRNELEIPGQYDGRGKPLPEYHVRIAGFDERVTVMASLRRPKRIIIRGHDEREHPF
Predicted secondary structure









































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Known secondary structure (DSSP) TTTS
SGGG



TTS


B
SS



TT



S


B




SSTT

TTS
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence LVKGGEDLRQDQRVEQLFQVMNGILAQDSACSQRALQLRTYSVVPMTSRLGLIEWLENTVTLKDLLLNTM
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Known secondary structure (DSSP) S

TT
T






TT

SSTTS
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence SQEEKAAYLSDPRAPPCEYKDWLTKMSGKHDVGAYMLMYKGANRTETVTSFRKRESKVPADLLKRAFVRM
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)
S
TT
SSSS
S

TS
S
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence STSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQFLPVPELMP
Predicted secondary structure






























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Known secondary structure (DSSP)


T




SSSTTT







SS
SS



S
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence FRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNFEQKMLKKGGSWIQE
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) S


TSSS
SSSST
TTS
SSS
S

S
 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence INVAEKNWYPRQKICYAKRKLAGANPAVITCDELLLGHEKAPAFRDYVAVARGSKDHNIRAQEPESGLSE
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)
S






B
TT
TT

SSSSTTSSS
SBS

 .........3650.........3660.........3670.........3680.........3690....
Sequence ETQVKCLMDQATDPNILGRTWEGWEPWMXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure















SS confidence





















































Known secondary structure (DSSP) T
TTS
GGG
S



GGG








Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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