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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6zh2A_

Fold library idPDB HeaderMoleculeTitle
c6zh2A_3.92PDB header: dna binding proteinChain: A: PDB Molecule: dna-dependent protein kinase catalytic subunit,dna-


Added to library: Sat Oct 24 09:28:54 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RCSLLRLQETLSAADRCGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFSRDFGLLVFVRKSLNSIEF
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Known secondary structure (DSSP)

GGGS
STTTSTTTTS

S
TS

 .........80.........90.........100.........110.........120.........130.........140
Sequence RECREEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKDALDLLIKLLQTFRSSRLMDEFKIGELFSKF
Predicted secondary structure




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Known secondary structure (DSSP)
SS

TTT



SSTTTS


GGGS

 .........150.........160.........170.........180.........190.........200.........210
Sequence YGELALKKKIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMLPVLAGCLKGLSSLLCNF
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP)

SSS
SSGGGTT
SSS
SSTT


TGGGS
 .........220.........230.........240.........250.........260.........270.........280
Sequence TKSMEEDPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTCLLDNYVSLFEVLLKWCAHT
Predicted secondary structure


















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Known secondary structure (DSSP)


TTSSSSSTTTS
S



TT
SGGGSSSTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence NVELKKAALSALESFLKQVSNMVAKNAEMHKNKLQYFMEQFYGIIRNVDSNNKELSIAIRGYGLFAGPCK
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP)
TTTTT

SS
S

S
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence VINAKDVDFMYVELIQRCKQMFLTQTDTGDDRVYQMPSFLQSVASVLLYLDTVPEVYTPVLEHLVVMQID
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) SSS

SS
SS

SS
GGG
SS

TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence SFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSKPVVLPWKVPTYKDYVDLFRHL
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) T
TTS
TTSSS









GGGG
 .........500.........510.........520.........530.........540.........550.........560
Sequence LSSDQMMDSILADEAFFSVNSSSESLNHLLYDEFVKSVLKIVEKLDLTLEIQMIPTSDPAANLHPAKPKD
Predicted secondary structure



















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Known secondary structure (DSSP) TTTTTT
SS

TTS


TT










SSSSSS
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence FSAFINLVEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIKYFEGVSPD
Predicted secondary structure












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Known secondary structure (DSSP) TTTTTTS
TTSSGGGSTT
STTTTT



 .........640.........650.........660.........670.........680.........690.........700
Sequence PEKYSCFALFVKFGKEVAVKMKQYKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAE
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Known secondary structure (DSSP) TTT

SSTS
TT
GGG
 .........710.........720.........730.........740.........750.........760.........770
Sequence VGLNALEEWSIYIDRHVMQPYYKDILPCLDGYLKTSALSLEEIRIRVVQMLGSLGGQINKNLLTVTSSDE
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Known secondary structure (DSSP) S
GGGGGGGGGGTTT



S
TTTGGGGGGGGGTSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence MMKSYVAWDREKRLSFAVPFREMKPVIFLDVFLPRVTELALTASDRQTKVAACELLHSMVMFMLGKATQM
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Known secondary structure (DSSP) S
SSSB
SSSS






SS



GGGG
TTSS


 .........850.........860.........870.........880.........890.........900.........910
Sequence GAPPMYQLYKRTFPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQDTVALLEAILDGIVDPVDS
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Known secondary structure (DSSP)




TT
S
TSTT

SGGGTTTTT

SS
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence TLRDFCGRCIREFLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALHPNAFKRLGASLAFNNIYREFREEE
Predicted secondary structure
















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Known secondary structure (DSSP) TTS
SSSST
SSTTTTTTTTSSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SLVEQFVFEALVIYMESLALAHADEKSLGTIQQCCDAIDHLCRIIEKKHVSLNKAKKRRLPRGFPPSASL
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Known secondary structure (DSSP) GGGS
TTSTGGGSS
B




TT



S
B
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence CLLDLVKWLLAHCGRPQTECRHKSIELFYKFVPLLPGNRSPNLWLKDVLKEEGVSFLINTFEGGGCGQPS
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Known secondary structure (DSSP)
TSS
S
TTGGGSTT


S
SS
SSSSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence GILAQPTLLYLRGPFSLQATLCWLDLLLAALECYNTFIGERTVGALQVLGTEAQSSLLKAVAFFLESIAM
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Known secondary structure (DSSP) STTT
SSS

S
S
SSSTTT
S
GGGTSSSSTT
GGGTSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence HDIIAAEKCTGAAGNRTSPQEGERYNYSKCTVVVRIMEFTTTLLNTSPEGWKLLKKDLCNTHLMRVLVQT
Predicted secondary structure










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Known secondary structure (DSSP)
SS







SGGGGG
TTSSSS
STTTTTTTT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LCEPASIGFNIGDVQVMAHLPDVCVNLMKALKMSPYKDILETHLREKITAQSIEELCAVNLYGPDAQVDR
Predicted secondary structure













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Known secondary structure (DSSP)
TTTTS
TT
SSSGGGTSTTS
TT

SSSS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SRLAAVVSACKQLHRAGLLHNILPSQSTDLHHSVGTELLSLVYKGIAPGDERQCLPSLDLSCKQLASGLL
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Known secondary structure (DSSP) T
S

SSSSS





SSSS
SSS
S





SS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence ELAFAFGGLCERLVSLLLNPAVLSTASVIHFSHGEYFYSLFSETINTELLKNLDLAVLELMQSSVDNTKM
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Known secondary structure (DSSP) TSSS
S


B

B


B

BTTTTTTTSS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence VSAVLNGMLDQSFRERANQKHQGLKLATTILQHWKKCDSWWAKDSPLETKMAVLALLAKILQIDSSVSFN
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Known secondary structure (DSSP) TTTT
TGGGSGGGSSSSS
S
TTTSS
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence TSHGSFPEVFTTYISLLADTKLDLHLKGQAVTLLPFFTSLTGGSLEELRRVLEQLIVAHFPMQSREFPPG
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Known secondary structure (DSSP) STTS

SSS
TTGGGG


TTTT

SSS
SS
TT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence TPRFNNYVDCMKKFLDALELSQSPMLLELMTEVLCREQQHVMEELFQSSFRRIARRGSCVTQVGLLESVY
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SS confidence





































































Known secondary structure (DSSP)


TSSS
TTS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence EMFRKDDPRLSFTRQSFVDRSLLTLLWHCSLDALREFFSTIVVDAIDVLKSRFTKLNESTFDTQITKKMG
Predicted secondary structure







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Known secondary structure (DSSP)



S
TTTT

STS



TTTT
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence YYKILDVMYSRLPKDDVHAKESKINQVFHGSCITEGNELTKTLIKLCYDAFTENMAGENQLLERRRLYHC
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Known secondary structure (DSSP) SSS
GGGTSSSS



S
SS
TTS
SS
SSS

TT

SS

 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence AAYNCAISVICCVFNELKFYQGFLFSEKPEKNLLIFENLIDLKMDELNRHECMAPLTALVKHMHRSLPRD
Predicted secondary structure







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Known secondary structure (DSSP)

STT





SS

GGGGSS



S
S


TTTSSSTTT


S
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence LPSWMKFLHGKLGNPIVPLNIRLFLAKLVINTEEVFRPYAKHWLSPLLQLAASENNGGEGIHYMVVEIVA
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Known secondary structure (DSSP)

STT
TTS
TGGGT
SSSSSSSSS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence TILSWTGLATPTGVPKDEVLANRLLNFLMKHVFHPKRAVFRHNLEIIKTLVECWKDCLSIPYRLIFEKFS
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Known secondary structure (DSSP) TTTTTS
S
SST


SSGGG



S
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence GKDPNSKDNSVGIQLLGIVMANDLPPYDPQCGIQSSEYFQALVNNMSFVRYKEVYAAAAEVLGLILRYVM
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Known secondary structure (DSSP) S

SS
TTT

TTSS

SS
SGGG

SSSG
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence ERKNILEESLCELVAKQLKQHQNTMEDKFIVCLNKVTKSFPPLADRFMNAVFFLLPKFHGVLKTLCLEVV
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Known secondary structure (DSSP) GGTTTSTSTT
GGGGGGGGGG

S
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence LCRVEGMTELYFQLKSKDFVQVMRHRDDERQKVCLDIIYKMMPKLKPVELRELLNPVVEFVSHPSTTCRE
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Known secondary structure (DSSP) SSSSSSS
STTS

GGG

GGGTT
TTSS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence QMYNILMWIHDNYRDPESETDNDSQEIFKLAKDVLIQGLIDENPGLQLIIRNFWSHETRLPSNTLDRLLA
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Known secondary structure (DSSP) T

SSSS

SSTT
SSTSTTTS
SSS
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence LNSLYSPKIEVHFLSLATNFLLEMTSMSPDYPNPMFEHPLSECEFQEYTIDSDWRVLTPMFVQVVLYRSY
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Known secondary structure (DSSP) GGG

GGGTTTTTTGGGGGSS
SS

S
SS
SS












S
S






S

 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence RHGDLPDIQIKHSSLITPLQAVAQRDPIIAKQLFSSLFSGILKEMDKFKTLSEKNNITQKLLQDFNRFLN
Predicted secondary structure






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Known secondary structure (DSSP) SS





TT
TTTS
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence TTFSFFPPFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLEEALLRLLPLPPDVLRWVELAK
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Known secondary structure (DSSP) T
SS


STT



T
S




 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence LYRSIGEYDVLRGIFTSEIGTKQITQSALLAEARSDYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELAS
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Known secondary structure (DSSP)

TT

STT
TS



TT



 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence LDCYNHLAEWKSLEYCSTASIDSENPPDLNKIWSEPFYQETYLPYMIRSKLKLLLQGEADQSLLTFIDKA
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Known secondary structure (DSSP) S

TTTSTT
SSSS


STTTTSSSS
TTTT


S
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence MHGELQKAILELHYSQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEI
Predicted secondary structure









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Known secondary structure (DSSP) T
SSS
TT
S
SS
T
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence QEFISFISKQGNLSSQVPLKRLLNTWTNRYPDAKMDPMNIWDDIITNRCFFLSKIEEKLDISSLIRSCKF
Predicted secondary structure














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Known secondary structure (DSSP)

TTTTSTT



TTTS



TTT
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence SMKMKMIDSARKQNNFSLAMKLLKELHKESKTRDDWLVSWVQSYCRLSHCRSRSQGCSEQVLTVLKTVSL
Predicted secondary structure














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Known secondary structure (DSSP) TT
GGG
SSSST


 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence LDENNVSSYLSKNILAFRDQNILLGTTYRIIANALSSEPACLAEIEEDKARRILELSGSSSEDSEKVIAG
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)

STTSSTTTS
TTTTS
TTTTTTS
SSS
S
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence LYQRAFQHLSEAVQAAEEEAPAAGVIDAYMTLADFCDQQLRKEEENLQAYPALVVEKMLKALKLNSNEAR
Predicted secondary structure










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Known secondary structure (DSSP) T




S



S

 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence LKFPRLLQIIERYPEETLSLMTKEISSVPCWQFISWISHMVALLDKDQAVAVQHSVEEITDNYPQAIVYP
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Known secondary structure (DSSP) TTS
GGGTSTTTTTS
TTSSGGGGGGSSSTT
TTTSTTSS
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence FIISSESYSFKDTSTGHKNKEFVARIKSKLDQGGVIQDFINALDQLSNPELLFKDWSNDVRAELAKTPVN
Predicted secondary structure





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Known secondary structure (DSSP) TT




SSSST
SSSGGGS
TTSTT
SS


 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence KKNIEKMYERMYAALGDPKAPGLGAFRRKFIQTFGKEFDKHFGKGGSKLLRMKLSDFNDITNMLLLKMNK
Predicted secondary structure













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Known secondary structure (DSSP)
TTTTSSSS

TT

TTTTTT
TTTTSS
TTSSSGG
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence DSKPPGNLKECSPWMSDFKVEFLRNELEIPGQYDGRGKPLPEYHVRIAGFDERVTVMASLRRPKRIIIRG
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Known secondary structure (DSSP) GS

S
TTTSSGGGG



TTS


B
TT


SSSSS

S


B
S

SSS

 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence HDEREHPFLVKGGEDLRQDQRVEQLFQVMNGILAQDSACSQRALQLRTYSVVPMTSRLGLIEWLENTVTL
Predicted secondary structure





























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Known secondary structure (DSSP) TTT
SS

T
STT






TT

SS
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence KDLLLNTMSQEEKAAYLSDPRAPPCEYKDWLTKMSGKHDVGAYMLMYKGANRTETVTSFRKRESKVPADL
Predicted secondary structure






















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Known secondary structure (DSSP) S
S
TTSSS

STT

S
S
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence LKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQF
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Known secondary structure (DSSP) B
ST




GGGTTT







TTT
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence LPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNFEQKMLK
Predicted secondary structure




























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Known secondary structure (DSSP) SSS



SS


GGGTTS
TTSST
TTSST
 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence KGGSWIQEINVAEKNWYPRQKICYAKRKLAGANPAVITCDELLLGHEKAPAFRDYVAVARGSKDHNIRAQ
Predicted secondary structure





























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Known secondary structure (DSSP) S
SS
SS



S
S


TTS
B

TT
TT

SSSSTTSS
 .........3650.........3660.........3670.........3680.........3690.........3700....
Sequence EPESGLSEETQVKCLMDQATDPNILGRTWEGWEPWMXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure






















SS confidence































































Known secondary structure (DSSP) S
SB



TS
GGG




GGGG




T




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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