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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6zfpA_

Fold library idPDB HeaderMoleculeTitle
c6zfpA_3.24PDB header: dna binding proteinChain: A: PDB Molecule: dna-dependent protein kinase catalytic subunit,dna-pkcs,


Added to library: Sat Oct 24 09:26:05 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RCSLLRLQETLSAADRCGAALAGHQLIRGLGQECVLSSSPAVLALQTSLVFSRDFGLLVFVRKSLNSIEF
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Known secondary structure (DSSP)
TTTTS
STTTSSST



TTTTT


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence RECREEILKFLCIFLEKMGQKIAPYSVEIKNTCTSVYTKDALDLLIKLLQTFRSSRLMDEFKIGELFSKF
Predicted secondary structure




SS confidence





































































Known secondary structure (DSSP) SSS

SST


TTTT


GGG


 .........150.........160.........170.........180.........190.........200.........210
Sequence YGELALKKKIPDTVLEKVYELLGLLGEVHPSEMINNAENLFRAFLGELKTQMLPVLAGCLKGLSSLLCNF
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP) GGGSS

TT
TT

SS
SS


TTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence TKSMEEDPQTSREIFNFVLKAIRPQIDLKRYAVPSAGLRLFALHASQFSTCLLDNYVSLFEVLLKWCAHT
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Known secondary structure (DSSP)


TTSSSSSTTT
S


SS
TT
TTSSTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence NVELKKAALSALESFLKQVSNMVAKNAEMHKNKLQYFMEQFYGIIRNVDSNNKELSIAIRGYGLFAGPCK
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP)
TTTT
SSSSS

S
STS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VINAKDVDFMYVELIQRCKQMFLTQTDTGDDRVYQMPSFLQSVASVLLYLDTVPEVYTPVLEHLVVMQID
Predicted secondary structure









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Known secondary structure (DSSP) SSS
TTTTT

S
SSS
TTSTT
SS

GGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence SFPQYSPKMQLVCCRAIVKVFLALAAKGPVLRNCISTVVHQGLIRICSKPVVLPWKVPTYKDYVDLFRHL
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP) T
TTS
TTSSSS









TTTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LSSDQMMDSILADEAFFSVNSSSESLNHLLYDEFVKSVLKIVEKLDLTLEIQMIPTSDPAANLHPAKPKD
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Known secondary structure (DSSP) TT
TTGGGS


SSS


S
TT









STTSSSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence FSAFINLVEFCREILPEKQAEFFEPWVYSFSYELILQSTRLPLISGFYKLLSITVRNAKKIKYFEGVSPD
Predicted secondary structure












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Known secondary structure (DSSP) TTTS
GGGTGGG
TT
TTTTTTT



 .........640.........650.........660.........670.........680.........690.........700
Sequence PEKYSCFALFVKFGKEVAVKMKQYKDELLASCLTFLLSLPHNIIELDVRAYVPALQMAFKLGLSYTPLAE
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Known secondary structure (DSSP) TTS

TTTTS

TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence VGLNALEEWSIYIDRHVMQPYYKDILPCLDGYLKTSALSLEEIRIRVVQMLGSLGGQINKNLLTVTSSDE
Predicted secondary structure

















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Known secondary structure (DSSP) S
GGGGGGGGGGG

S
TTTGGGGGTST
 .........780.........790.........800.........810.........820.........830.........840
Sequence MMKSYVAWDREKRLSFAVPFREMKPVIFLDVFLPRVTELALTASDRQTKVAACELLHSMVMFMLGKATQM
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Known secondary structure (DSSP) T
TTTS
S
SS





SS


GGGG

SSSTT

 .........850.........860.........870.........880.........890.........900.........910
Sequence GAPPMYQLYKRTFPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQDTVALLEAILDGIVDPVDS
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Known secondary structure (DSSP)




T
SSTSTT

SGGGTTTTTTSS
SSS
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence TLRDFCGRCIREFLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALHPNAFKRLGASLAFNNIYREFREEE
Predicted secondary structure
















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Known secondary structure (DSSP) S
GGGGGT
TT
T
SSSSTTTTTTTT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SLVEQFVFEALVIYMESLALAHADEKSLGTIQQCCDAIDHLCRIIEKKHVSLNKAKKRRLPRGFPPSASL
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Known secondary structure (DSSP) GGGS
TTSSSTS
B




TT



S
B
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence CLLDLVKWLLAHCGRPQTECRHKSIELFYKFVPLLPGNRSPNLWLKDVLKEEGVSFLINTFEGGGCGQPS
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Known secondary structure (DSSP)
TTT
S
GGGSTT


S
TS
SSSSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence GILAQPTLLYLRGPFSLQATLCWLDLLLAALECYNTFIGERTVGALQVLGTEAQSSLLKAVAFFLESIAM
Predicted secondary structure















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Known secondary structure (DSSP) STTT
SSSS

SS
TTSTTTTSSS
TTSSS


TTSSSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence HDIIAAEKCTGAAGNRTSPQEGERYNYSKCTVVVRIMEFTTTLLNTSPEGWKLLKKDLCNTHLMRVLVQT
Predicted secondary structure










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Known secondary structure (DSSP)
SS

TT



SSS



TTTSS
STTTT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence LCEPASIGFNIGDVQVMAHLPDVCVNLMKALKMSPYKDILETHLREKITAQSIEELCAVNLYGPDAQVDR
Predicted secondary structure













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Known secondary structure (DSSP)
GGGGT
TTS
SSSTTTTS
TT

SSSS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SRLAAVVSACKQLHRAGLLHNILPSQSTDLHHSVGTELLSLVYKGIAPGDERQCLPSLDLSCKQLASGLL
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Known secondary structure (DSSP) T
S


SSSS
TTTTTTSS
SSS
SS




SS
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence ELAFAFGGLCERLVSLLLNPAVLSTASVIHFSHGEYFYSLFSETINTELLKNLDLAVLELMQSSVDNTKM
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Known secondary structure (DSSP) SSSS
T


B

B


B

BTTTTTTT
S
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence VSAVLNGMLDQSFRERANQKHQGLKLATTILQHWKKCDSWWAKDSPLETKMAVLALLAKILQIDSSVSFN
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Known secondary structure (DSSP) T
SS
TGGGGTTTSSTTS
S
TTS
S
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence TSHGSFPEVFTTYISLLADTKLDLHLKGQAVTLLPFFTSLTGGSLEELRRVLEQLIVAHFPMQSREFPPG
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Known secondary structure (DSSP) SSSSST
TTS
GGGSS

SSSS
SSS
SS
TT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence TPRFNNYVDCMKKFLDALELSQSPMLLELMTEVLCREQQHVMEELFQSSFRRIARRGSCVTQVGLLESVY
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Known secondary structure (DSSP) S

TTSSS
TTTTTS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence EMFRKDDPRLSFTRQSFVDRSLLTLLWHCSLDALREFFSTIVVDAIDVLKSRFTKLNESTFDTQITKKMG
Predicted secondary structure







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Known secondary structure (DSSP) T
SS


TTTTT

SST

TTTTTS
T
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence YYKILDVMYSRLPKDDVHAKESKINQVFHGSCITEGNELTKTLIKLCYDAFTENMAGENQLLERRRLYHC
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Known secondary structure (DSSP) SSS
SSSS



BTTTBTS

SS

S

TT

SS
S
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence AAYNCAISVICCVFNELKFYQGFLFSEKPEKNLLIFENLIDLKMDELNRHECMAPLTALVKHMHRSLPRD
Predicted secondary structure







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Known secondary structure (DSSP)

SS






SS

TS
S








SSTT
TTS




 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence LPSWMKFLHGKLGNPIVPLNIRLFLAKLVINTEEVFRPYAKHWLSPLLQLAASENNGGEGIHYMVVEIVA
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Known secondary structure (DSSP)


TTS
TGGGTSSS

SSSSS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence TILSWTGLATPTGVPKDEVLANRLLNFLMKHVFHPKRAVFRHNLEIIKTLVECWKDCLSIPYRLIFEKFS
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Known secondary structure (DSSP) TTTT

STT
T


SSTTTT



SS
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence GKDPNSKDNSVGIQLLGIVMANDLPPYDPQCGIQSSEYFQALVNNMSFVRYKEVYAAAAEVLGLILRYVM
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Known secondary structure (DSSP) S

SS
GGGTT

TT


TTS
GGGG

SS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence ERKNILEESLCELVAKQLKQHQNTMEDKFIVCLNKVTKSFPPLADRFMNAVFFLLPKFHGVLKTLCLEVV
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Known secondary structure (DSSP) T
SSSTTTTTSS
GGGTTTTGGG

S
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence LCRVEGMTELYFQLKSKDFVQVMRHRDDERQKVCLDIIYKMMPKLKPVELRELLNPVVEFVSHPSTTCRE
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Known secondary structure (DSSP) SSSS

S
STTTTSS
SGGG

GGGTT
TTSSS
 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence QMYNILMWIHDNYRDPESETDNDSQEIFKLAKDVLIQGLIDENPGLQLIIRNFWSHETRLPSNTLDRLLA
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Known secondary structure (DSSP) S

SSSS

SSGGG
SSTSTTTS
SS
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence LNSLYSPKIEVHFLSLATNFLLEMTSMSPDYPNPMFEHPLSECEFQEYTIDSDWRVLTPMFVQVVLYRSY
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Known secondary structure (DSSP) GGGG

TTSTTSTTSSTTSTTSTTTTS
S
SS
SSS












S
S






S

 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence RHGDLPDIQIKHSSLITPLQAVAQRDPIIAKQLFSSLFSGILKEMDKFKTLSEKNNITQKLLQDFNRFLN
Predicted secondary structure






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Known secondary structure (DSSP)
SS




TTTT
TTTTS
 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence TTFSFFPPFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLEEALLRLLPLPPDVLRWVELAK
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Known secondary structure (DSSP) T
SS

TSTTGGG

TT
S



 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence LYRSIGEYDVLRGIFTSEIGTKQITQSALLAEARSDYSEAAKQYDEALNKQDWVDGEPTEAEKDFWELAS
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Known secondary structure (DSSP) SS
TT

SSTTTTT
T



SS



 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence LDCYNHLAEWKSLEYCSTASIDSENPPDLNKIWSEPFYQETYLPYMIRSKLKLLLQGEADQSLLTFIDKA
Predicted secondary structure















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Known secondary structure (DSSP) S

TTTS
SSSSSS

TTTTTTSSS

TTTTT



TT
 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence MHGELQKAILELHYSQELSLLYLLQDDVDRAKYYIQNGIQSFMQNYSSIDVLLHQSRLTKLQSVQALTEI
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP) STTTT
T
S
TT
TT
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence QEFISFISKQGNLSSQVPLKRLLNTWTNRYPDAKMDPMNIWDDIITNRCFFLSKIEEKLDISSLIRSCKF
Predicted secondary structure














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Known secondary structure (DSSP) S
STTSSS



TTTS
T

TTTS
 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence SMKMKMIDSARKQNNFSLAMKLLKELHKESKTRDDWLVSWVQSYCRLSHCRSRSQGCSEQVLTVLKTVSL
Predicted secondary structure














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Known secondary structure (DSSP) TT
TTTTTTSSSSSST


 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence LDENNVSSYLSKNILAFRDQNILLGTTYRIIANALSSEPACLAEIEEDKARRILELSGSSSEDSEKVIAG
Predicted secondary structure
SS confidence





































































Known secondary structure (DSSP)

SS
SSTTTSSTTTTS
GGGGGGS
TSSS
SS
 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence LYQRAFQHLSEAVQAAEEEAPAAGVIDAYMTLADFCDQQLRKEEENLQAYPALVVEKMLKALKLNSNEAR
Predicted secondary structure










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Known secondary structure (DSSP) TT







SS

 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence LKFPRLLQIIERYPEETLSLMTKEISSVPCWQFISWISHMVALLDKDQAVAVQHSVEEITDNYPQAIVYP
Predicted secondary structure











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Known secondary structure (DSSP) TTTTSSGGGGTTTTTS
TTSSGGGGGGSSSTT
TTTSTTSS
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence FIISSESYSFKDTSTGHKNKEFVARIKSKLDQGGVIQDFINALDQLSNPELLFKDWSNDVRAELAKTPVN
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP) TT


TTSSST
SSSTSS
TSSSSS


 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence KKNIEKMYERMYAALGDPKAPGLGAFRRKFIQTFGKEFDKHFGKGGSKLLRMKLSDFNDITNMLLLKMNK
Predicted secondary structure













SS confidence





































































Known secondary structure (DSSP)
SSGGGSS
S

SS

TTTTSS
TTTGGG


SSGG
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence DSKPPGNLKECSPWMSDFKVEFLRNELEIPGQYDGRGKPLPEYHVRIAGFDERVTVMASLRRPKRIIIRG
Predicted secondary structure











































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Known secondary structure (DSSP) GS
SS


TTTS
SGGG



SS



B
TT


SSSSS

S


B
S


SSTT

 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence HDEREHPFLVKGGEDLRQDQRVEQLFQVMNGILAQDSACSQRALQLRTYSVVPMTSRLGLIEWLENTVTL
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) TTTSS

TTSSTT






TT

TT
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence KDLLLNTMSQEEKAAYLSDPRAPPCEYKDWLTKMSGKHDVGAYMLMYKGANRTETVTSFRKRESKVPADL
Predicted secondary structure






















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Known secondary structure (DSSP) TS
S
TTSSSSS
STT

TTTTS
S
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence LKRAFVRMSTSPEAFLALRSHFASSHALICISHWILGIGDRHLNNFMVAMETGGVIGIDFGHAFGSATQF
Predicted secondary structure






















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Known secondary structure (DSSP) S
SSTT




GGGTTT





S
SSS
 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence LPVPELMPFRLTRQFINLMLPMKETGLMYSIMVHALRAFRSDPGLLTNTMDVFVKEPSFDWKNFEQKMLK
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Known secondary structure (DSSP) SSS


SSS


TTT
SS
TTSST
TTS
T
 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence KGGSWIQEINVAEKNWYPRQKICYAKRKLAGANPAVITCDELLLGHEKAPAFRDYVAVARGSKDHNIRAQ
Predicted secondary structure





























SS confidence





































































Known secondary structure (DSSP) S

S
SS









SSTTTTTT

STTSTTS

TTTSTTSS
 .........3650.........3660.........3670.........3680.........3690.........3700....
Sequence EPESGLSEETQVKCLMDQATDPNILGRTWEGWEPWMXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure






















SS confidence































































Known secondary structure (DSSP) S
SS


TTT
TTS
GGG





GGGG



TTTTTS





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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