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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6zcaY_

Fold library idPDB HeaderMoleculeTitle
c6zcaY_4.20PDB header: transcriptionChain: Y: PDB Molecule: dna-directed rna polymerase subunit beta';


Added to library: Sat Oct 17 09:04:21 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NFEYMNIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWECHCGKYKRVRYKGVVC
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TT
SSB





S
TTT
S

TTSTT


SSTT

TTSS

STT

S
B
 .........80.........90.........100.........110.........120.........130.........140
Sequence DRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDMSPRALEEVIYFASYVVTDPANTPLE
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Known secondary structure (DSSP) SSS

B
S
S
GGGT



STTTSSSS
T

TTS



SS
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KKQLLSEKEYRAYLDKYGNKFQASMGAEAIHKLLQDIDLVKEVDMLKEELKTSQGQRRTRAIKRLEVLEA
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Known secondary structure (DSSP) SS


SSSS

SS
STT

T
 .........220.........230.........240.........250.........260.........270.........280
Sequence FRNSGNKPSWMILDVLPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEK
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Known secondary structure (DSSP) TT

GGG
S

GGGS


B
TTS
B


TT

 .........290.........300.........310.........320.........330.........340.........350
Sequence RMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGRSVIVVGPHLKMYQCGLPKEMALELFKPFVMKE
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Known secondary structure (DSSP)
TTSSS



TTTT









TTS
SS

ST
 .........360.........370.........380.........390.........400.........410.........420
Sequence LVEKGLAHNIKSAKRKIERVQPEVWDVLESVIKEHPVLLNIQAFEPTLVEGRAIRLHPLVCTAYNADFDG
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Known secondary structure (DSSP) SS
S
S

TT






SSS

TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence DQMAVHVPLSAEAQAEARILMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERAGAVGEGMVFKNTDEA
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Known secondary structure (DSSP)




B


STSSTT







SS
SS
S
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LLAYQNGYVHLHTRVAVAANSLKNVTFTEEQRSKLLITTVGKLVFNEILPESFPYMNEPTKSNIEEKTPD
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Known secondary structure (DSSP) TTTT

SSSSSSSS
STT
SSS

SS
SSS



SSSS


T
 .........570.........580.........590.........600.........610.........620.........630
Sequence RFFLEKGADVKAVIAQQPINAPFKKGILGKIIAEIFKRFHITETSKMLDRMKNLGFKYSTKAGITVGVSD
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Known secondary structure (DSSP) TTS

S
S
SS






S





TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence IVVLDDKQEILEEAQSKVDNVMKQFRRGLITEEERYERVISIWSAAKDVIQGKLMKSLDELNPIYMMSDS
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Known secondary structure (DSSP)



TTTTSS
S
TT
 .........710.........720.........730.........740.........750.........760.........770
Sequence GARGNASNFTQLAGMRGLMANPAGRIIELPIKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTR
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Known secondary structure (DSSP) TSS

SS




B
SSS
B
S





TTT


T

S



S
 .........780.........790.........800.........810.........820.........830.........840
Sequence RLVDVAQDVIIRETDCGTDRGILAKPLKEGTETIERLEERLIGRFARKQVKHPETGEVLVNENELIDEDK
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Known secondary structure (DSSP) T




SS








SSS
SSSTTSS
BBSS



STTSS
SS
SS
B

 .........850.........860.........870.........880.........890.........900.........910
Sequence ALEIVEAGIEEVWIRSAFTCNTPHGVCKRCYGRNLATGSDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTG
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Known secondary structure (DSSP) TTT




TTS


SSS


B
TTTSSB

SS

T

 .........920.........930.........940.........950.........960.........970.........980
Sequence GVAGDDITQGLPRIQELFEARNPKGQATITEIDGTVVEINEVRDKQQEIVVQGAVETRSYTAPYNSRLKV
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Known secondary structure (DSSP)
SSTTTTS

TT


SSB

B
SS







B
TTS
SS
SSS
BSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence AEGDKITRGQVLTEGSIDPKELLKVTDLTTVQEYLLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVID
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Known secondary structure (DSSP)
SS



TT
B
BSSB

S
TTS



T

 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence AGDTDVLPGTLLDIHQFTEANKKVLLEGNRPATGRPVLLGITKASLETDSFLSAASFQETTRVLTDAAIK
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Known secondary structure (DSSP)
TTSS

TT

SSS






SS
S
S
 .......
Sequence GKRDELL
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Known secondary structure (DSSP) T






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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