PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6zcaX_

Fold library id	PDB Header	Molecule	Title
c6zcaX_	4.20	PDB header: transcription	Chain: X: PDB Molecule: dna-directed rna polymerase subunit beta;

Links to external resources
Added to library: Sat Oct 17 08:50:43 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T G Q L V Q Y G R H R Q R R S Y A R I S E V L E L P N L I E I Q T S S Y Q W F L D E G L R E M F Q D I S P I E D F T G N L S L E F I D Y S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S S
S S
T T
B
S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G E P K Y P V E E S K E R D V T Y S A P L R V K V R L I N K E T G E V K D Q D V F M G D F P I M T D T G T F I I N G A E R V I V S Q L V R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
B
T T S
B
T T S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence P S V Y F S G K V D K N G K K G F T A T V I P N R G A W L E Y E T D A K D V V Y V R I D R T R K L P V T V L L R A L G F G S D Q E I L D L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S
S S S
G G G S S S
S
B T T
S S T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence G E N E Y L R N T L D K D N T E N S D K A L L E I Y E R L R P G E P P T V E N A K S L L D S R F F D P K R Y D L A N V G R Y K I N K K L H I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S S
S S
S
T T T S
S
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence K N R L F N Q R L A E T L V K V L P Y L E N G I G F R K L Y P N G G V V E D E V T L Q S I K I F A P T D Q E G E Q V I N V I G N A Y I E E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S
B S S
S S S
B
S S S
B B
S S S
B
S
S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence I K N I T P A D I I S S I S Y F F N L L H G V G D T D D I D H L G N R R L R S V G E L L Q N Q F R I G L S R M E R V V R E R M S I Q D T N T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S S
G G G
S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence I T P Q Q L I N I R P V I A S I K E F F G S S Q L S Q F M D Q T N P L A E L T H K R R L S A L G P G G L T R E E V R D V H Y S H Y G R M C P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S
S S
S S
S
S
S S S
S
T T S S B
S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence I E T P E G P N I G L I N S L S S Y A K V N R F G F I E T P Y R R V D P E T G K V T G R I D Y L T A D E E D N Y V V A Q A N A R L D D E G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S T T S B
S S
S S S
T T T
T S
B B
T T
B T T B S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence F I D D S I V A R F R G E N T V V S R N R V D Y M D V S P K Q V V S A A T A C I P F L E N D D S N R A L M G A N M Q R Q A V P L M Q P E A P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T
T T T
S
T T T T S
T T G G G S S
T T S S
T T
S S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence F V G T G M E Y V S G K D S G A A V I C K H P G I V E R V E A K N V W V R R Y E E V D G Q K V K G N L D K Y S L L K F V R S N Q G T C Y N Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S B
T T T S S S
S
S S
B T G G G B
S
T T S S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence R P I V S V G D E V V K G E I L A D G P S M E L G E L A L G R N V M V G F M T W D G Y N Y E D A I I M S E R L V K D D V Y T S I H I E E Y E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
B
T T
S S T T
S
T T T S
S S T T
S S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence S E A R D T K L G P E E I T R D I P N V G E D A L R N L D D R G I I R I G A E V K D G D L L V G K V T P K G V T E L T A E E R L L H A I F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B
S
S S
B
S S S
B
T T
B
S S
S
T T T
S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence E K A R E V R D T S L R V P H G G G G I I H D V K V F N R E D G D E L P P G V N Q L V R V Y I V Q K R K I S E G D K M A G R H G N K G V I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
T T
S B T T S S
T T
T T S
S S S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence K I L P E E D M P Y L P D G T P I D I M L N P L G V P S R M N I G Q V L E L H M G M A A R Y L G I H I A S P V F D G A R E E D V W E T L E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
B
T T S
B
G G G
T T T T
S S S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence A G M S R D A K T V L Y D G R T G E P F D N R V S V G I M Y M I K L A H M E M E V W A L E A Y G A A Y T L Q E I L T V K S D D V V G R V K T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S
B
B
S S S
B
S S
B
S
S
T T

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . .

Sequence Y E A I P E S F K V L I K E L Q S L G M D V K I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S

Download: PDB structure FASTA sequence
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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	G	Q	L	V	Q	Y	G	R	H	R	Q	R	R	S	Y	A	R	I	S	E	V	L	E	L	P	N	L	I	E	I	Q	T	S	S	Y	Q	W	F	L	D	E	G	L	R	E	M	F	Q	D	I	S	P	I	E	D	F	T	G	N	L	S	L	E	F	I	D	Y	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	T								S	S			S	S					T	T																									B			S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	E	P	K	Y	P	V	E	E	S	K	E	R	D	V	T	Y	S	A	P	L	R	V	K	V	R	L	I	N	K	E	T	G	E	V	K	D	Q	D	V	F	M	G	D	F	P	I	M	T	D	T	G	T	F	I	I	N	G	A	E	R	V	I	V	S	Q	L	V	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S								T	T					B											T	T	S													B					T	T	S					T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	P	S	V	Y	F	S	G	K	V	D	K	N	G	K	K	G	F	T	A	T	V	I	P	N	R	G	A	W	L	E	Y	E	T	D	A	K	D	V	V	Y	V	R	I	D	R	T	R	K	L	P	V	T	V	L	L	R	A	L	G	F	G	S	D	Q	E	I	L	D	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S										T	T	S											S	S	S									G	G	G						S	S	S		S			B								T	T			S	S					T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	G	E	N	E	Y	L	R	N	T	L	D	K	D	N	T	E	N	S	D	K	A	L	L	E	I	Y	E	R	L	R	P	G	E	P	P	T	V	E	N	A	K	S	L	L	D	S	R	F	F	D	P	K	R	Y	D	L	A	N	V	G	R	Y	K	I	N	K	K	L	H	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	S													S													S		S	S																S		T	T	T	S														S		S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	K	N	R	L	F	N	Q	R	L	A	E	T	L	V	K	V	L	P	Y	L	E	N	G	I	G	F	R	K	L	Y	P	N	G	G	V	V	E	D	E	V	T	L	Q	S	I	K	I	F	A	P	T	D	Q	E	G	E	Q	V	I	N	V	I	G	N	A	Y	I	E	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T			S		B	S	S									S	S	S														B					S	S	S					B	B							S	S	S							B			S			S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	I	K	N	I	T	P	A	D	I	I	S	S	I	S	Y	F	F	N	L	L	H	G	V	G	D	T	D	D	I	D	H	L	G	N	R	R	L	R	S	V	G	E	L	L	Q	N	Q	F	R	I	G	L	S	R	M	E	R	V	V	R	E	R	M	S	I	Q	D	T	N	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S																			S							S	S		G	G	G																																	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	I	T	P	Q	Q	L	I	N	I	R	P	V	I	A	S	I	K	E	F	F	G	S	S	Q	L	S	Q	F	M	D	Q	T	N	P	L	A	E	L	T	H	K	R	R	L	S	A	L	G	P	G	G	L	T	R	E	E	V	R	D	V	H	Y	S	H	Y	G	R	M	C	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S			T	T		S														S	S		S	S							S										S						S	S	S												S		T	T	S	S	B		S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	I	E	T	P	E	G	P	N	I	G	L	I	N	S	L	S	S	Y	A	K	V	N	R	F	G	F	I	E	T	P	Y	R	R	V	D	P	E	T	G	K	V	T	G	R	I	D	Y	L	T	A	D	E	E	D	N	Y	V	V	A	Q	A	N	A	R	L	D	D	E	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				S		S	S	T	T	S				B		S	S					S	S	S											T	T	T																	T	S		B	B		T	T				B	T	T	B	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	F	I	D	D	S	I	V	A	R	F	R	G	E	N	T	V	V	S	R	N	R	V	D	Y	M	D	V	S	P	K	Q	V	V	S	A	A	T	A	C	I	P	F	L	E	N	D	D	S	N	R	A	L	M	G	A	N	M	Q	R	Q	A	V	P	L	M	Q	P	E	A	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S		S							T	T							T	T	T						S		T	T	T	T	S		T	T	G	G	G	S	S		T	T	S	S													T	T					S	S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	F	V	G	T	G	M	E	Y	V	S	G	K	D	S	G	A	A	V	I	C	K	H	P	G	I	V	E	R	V	E	A	K	N	V	W	V	R	R	Y	E	E	V	D	G	Q	K	V	K	G	N	L	D	K	Y	S	L	L	K	F	V	R	S	N	Q	G	T	C	Y	N	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	B		T								T	T	S	S	S					S									S	S									B	T	G	G	G	B													S				T	T	S	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	R	P	I	V	S	V	G	D	E	V	V	K	G	E	I	L	A	D	G	P	S	M	E	L	G	E	L	A	L	G	R	N	V	M	V	G	F	M	T	W	D	G	Y	N	Y	E	D	A	I	I	M	S	E	R	L	V	K	D	D	V	Y	T	S	I	H	I	E	E	Y	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S		T	T		B			T	T							S	S			T	T					S											T	T	T	S		S	S						T					T		S	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	S	E	A	R	D	T	K	L	G	P	E	E	I	T	R	D	I	P	N	V	G	E	D	A	L	R	N	L	D	D	R	G	I	I	R	I	G	A	E	V	K	D	G	D	L	L	V	G	K	V	T	P	K	G	V	T	E	L	T	A	E	E	R	L	L	H	A	I	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S				B			S			S	S									B		S	S	S		B		T	T		B			S	S			S								T	T	T			S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	E	K	A	R	E	V	R	D	T	S	L	R	V	P	H	G	G	G	G	I	I	H	D	V	K	V	F	N	R	E	D	G	D	E	L	P	P	G	V	N	Q	L	V	R	V	Y	I	V	Q	K	R	K	I	S	E	G	D	K	M	A	G	R	H	G	N	K	G	V	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S												T	T			S	B									T	T	S	S					T	T																	T	T	S					S	S	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	K	I	L	P	E	E	D	M	P	Y	L	P	D	G	T	P	I	D	I	M	L	N	P	L	G	V	P	S	R	M	N	I	G	Q	V	L	E	L	H	M	G	M	A	A	R	Y	L	G	I	H	I	A	S	P	V	F	D	G	A	R	E	E	D	V	W	E	T	L	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	S	S		B		T	T	S		B							G	G	G							T														T	T	T							S	S	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	A	G	M	S	R	D	A	K	T	V	L	Y	D	G	R	T	G	E	P	F	D	N	R	V	S	V	G	I	M	Y	M	I	K	L	A	H	M	E	M	E	V	W	A	L	E	A	Y	G	A	A	Y	T	L	Q	E	I	L	T	V	K	S	D	D	V	V	G	R	V	K	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T		S	S	S		B			B		S	S	S			B		S	S		B											S																										S			T	T
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.
Sequence	Y	E	A	I	P	E	S	F	K	V	L	I	K	E	L	Q	S	L	G	M	D	V	K	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T	T	S