PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6z7pA_

Fold library id	PDB Header	Molecule	Title
c6z7pA_	4.80	PDB header: structural protein	Chain: A: PDB Molecule: s-layer protein;

Links to external resources
Added to library: Sat Jul 18 10:12:09 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A Y T T A Q L V T A Y T N A N L G K A P D A A T T L T L D A Y A T Q T Q T G G L S D A A A L T N T L K L V N S T T A V A I Q T Y Q F F T G V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T S S
T T T T T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A P S A A G L D F L V D S T T N T N D L N D A Y Y S K F A Q E N R F I N F S I N L A T G A G A G A T A F A A A Y T G V S Y A Q T V A T A Y D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
S
S S
S S
T T S G G G T T
S S S T T S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K I I G N A V A T A A G V D V A A A V A F L S R Q A N I D Y L T A F V R A N T P F T A A A D I D L A V K A A L I G T I L N A A T V S G I G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T
S S S
S T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Y A T A T A A M I N D L S D G A L S T D N A A G V N L F T A Y P S S G V S G S T L S L T T G T D T L T G T A N N D T F V A G E V A G A A T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S
T T
B
S
S S
S S S
B S S S
B S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence T V G D T L S G G A G T D V L N W V Q A A A V T A L P T G V T I S G I E T M N V T S G A A I T L N T S S G V T G L T A L N T N T S G A A Q T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S
S S
B
S
T T
S
S S
S S S S
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence V T A G A G Q N L T A T T A A Q A A N N V A V D G G A N V T V A S T G V T S G T T T V G A N S A A S G T V S V S V A N S S T T T T G A I A V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
T T
S S
S
T T
S S S S
S S
S S S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence T G G T A V T V A Q T A G N A V N T T L T Q A D V T V T G N S S T T A V T V T Q T A A A T A G A T V A G R V N G A V T I T D S A A A S A T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T
B
S S
G G G S
S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence A G K I A T V T L G S F G A A T I D S S A L T T V N L S G T G T S L G I G R G A L T A T P T A N T L T L N V N G L T T T G A I T D S E A A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
S
S
S S
S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence D D G F T T I N I A G S T A S S T I A S L V A A D A T T L N I S G D A R V T I T S H T A A A L T G I T V T N S V G A T L G A E L A T G L V F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S
S
T T
S S
S
T T
S S
T T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence T G G A G A D S I L L G A T T K A I V M G A G D D T V T V S S A T L G A G G S V N G G D G T D V L V A N V N G S S F S A D P A F G G F E T L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S
S S S
S S S S
T T
S S
S S
B
T T T
T T S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence R V A G A A A Q G S H N A N G F T A L Q L G A T A G A T T F T N V A V N V G L T V L A A P T G T T T V T L A N A T G T S D V F N L T L S S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
T T
S
S S
T T
S
S S
S
S S
S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence A A L A A G T V A L A G V E T V N I A A T D T N T T A H V D T L T L Q A T S A K S I V V T G N A G L N L T N T G N T A V T S F D A S A V T G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S S S S S
T T
S S S
T T
T T
T T
S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence T G S A V T F V S A N T T V G E V V T I R G G A G A D S L T G S A T A N D T I I G G A G A D T L V Y T G G T D T F T G G T G A D I F D I N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S S
T T
S S
S S S
S S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence I G T S T A F V T I T D A A V G D K L D L V G I S T N G A I A D G A F G A A V T L G A A A T L A Q Y L D A A A A G D G S G T S V A K W F Q F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S
T T
G G G
S S
S
B
T T
T
S
S S S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . .

Sequence G G D T Y V V V D S S A G A T F V S G A D A V I K L T G L V T L T T S A F A T E V L T L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S S S
T T T S S S
S S
S S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	Y	T	T	A	Q	L	V	T	A	Y	T	N	A	N	L	G	K	A	P	D	A	A	T	T	L	T	L	D	A	Y	A	T	Q	T	Q	T	G	G	L	S	D	A	A	A	L	T	N	T	L	K	L	V	N	S	T	T	A	V	A	I	Q	T	Y	Q	F	F	T	G	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	T																				T	T	S	S												T	T	T	T	T	T												S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	P	S	A	A	G	L	D	F	L	V	D	S	T	T	N	T	N	D	L	N	D	A	Y	Y	S	K	F	A	Q	E	N	R	F	I	N	F	S	I	N	L	A	T	G	A	G	A	G	A	T	A	F	A	A	A	Y	T	G	V	S	Y	A	Q	T	V	A	T	A	Y	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B											S		S	S		S	S		T	T	S	G	G	G	T	T																	S	S	S	T	T								S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	I	I	G	N	A	V	A	T	A	A	G	V	D	V	A	A	A	V	A	F	L	S	R	Q	A	N	I	D	Y	L	T	A	F	V	R	A	N	T	P	F	T	A	A	A	D	I	D	L	A	V	K	A	A	L	I	G	T	I	L	N	A	A	T	V	S	G	I	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S							T												S															S	S			S																						T	T			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Y	A	T	A	T	A	A	M	I	N	D	L	S	D	G	A	L	S	T	D	N	A	A	G	V	N	L	F	T	A	Y	P	S	S	G	V	S	G	S	T	L	S	L	T	T	G	T	D	T	L	T	G	T	A	N	N	D	T	F	V	A	G	E	V	A	G	A	A	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	S			S	S			T	T		B						S														S	S								S	S	S							B	S	S	S		B	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	T	V	G	D	T	L	S	G	G	A	G	T	D	V	L	N	W	V	Q	A	A	A	V	T	A	L	P	T	G	V	T	I	S	G	I	E	T	M	N	V	T	S	G	A	A	I	T	L	N	T	S	S	G	V	T	G	L	T	A	L	N	T	N	T	S	G	A	A	Q	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T							S	S									S	S		B		S			T	T					S									S	S							S	S	S			S										S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	V	T	A	G	A	G	Q	N	L	T	A	T	T	A	A	Q	A	A	N	N	V	A	V	D	G	G	A	N	V	T	V	A	S	T	G	V	T	S	G	T	T	T	V	G	A	N	S	A	A	S	G	T	V	S	V	S	V	A	N	S	S	T	T	T	T	G	A	I	A	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S								S		T	T									S	S							S		T	T						S	S	S	S			S	S										S	S	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	T	G	G	T	A	V	T	V	A	Q	T	A	G	N	A	V	N	T	T	L	T	Q	A	D	V	T	V	T	G	N	S	S	T	T	A	V	T	V	T	Q	T	A	A	A	T	A	G	A	T	V	A	G	R	V	N	G	A	V	T	I	T	D	S	A	A	A	S	A	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S												T	T														T	T												B				S	S														G	G	G	S		S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	A	G	K	I	A	T	V	T	L	G	S	F	G	A	A	T	I	D	S	S	A	L	T	T	V	N	L	S	G	T	G	T	S	L	G	I	G	R	G	A	L	T	A	T	P	T	A	N	T	L	T	L	N	V	N	G	L	T	T	T	G	A	I	T	D	S	E	A	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S									T	T								S														S			S									S	S				S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	D	D	G	F	T	T	I	N	I	A	G	S	T	A	S	S	T	I	A	S	L	V	A	A	D	A	T	T	L	N	I	S	G	D	A	R	V	T	I	T	S	H	T	A	A	A	L	T	G	I	T	V	T	N	S	V	G	A	T	L	G	A	E	L	A	T	G	L	V	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				S								S	S					S					T	T									S	S					S					T	T									S	S										T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	T	G	G	A	G	A	D	S	I	L	L	G	A	T	T	K	A	I	V	M	G	A	G	D	D	T	V	T	V	S	S	A	T	L	G	A	G	G	S	V	N	G	G	D	G	T	D	V	L	V	A	N	V	N	G	S	S	F	S	A	D	P	A	F	G	G	F	E	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S								S			S						S	S	S						S	S	S	S			T	T							S	S								S	S		B		T	T	T		T	T			S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	R	V	A	G	A	A	A	Q	G	S	H	N	A	N	G	F	T	A	L	Q	L	G	A	T	A	G	A	T	T	F	T	N	V	A	V	N	V	G	L	T	V	L	A	A	P	T	G	T	T	T	V	T	L	A	N	A	T	G	T	S	D	V	F	N	L	T	L	S	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	T	T								T	T		S								S	S									T	T							S			S	S							S				S	S											S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	A	A	L	A	A	G	T	V	A	L	A	G	V	E	T	V	N	I	A	A	T	D	T	N	T	T	A	H	V	D	T	L	T	L	Q	A	T	S	A	K	S	I	V	V	T	G	N	A	G	L	N	L	T	N	T	G	N	T	A	V	T	S	F	D	A	S	A	V	T	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S										T	T		S									S	S	S	S											T	T		S							S	S							T	T		T	T							T	T			S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	T	G	S	A	V	T	F	V	S	A	N	T	T	V	G	E	V	V	T	I	R	G	G	A	G	A	D	S	L	T	G	S	A	T	A	N	D	T	I	I	G	G	A	G	A	D	T	L	V	Y	T	G	G	T	D	T	F	T	G	G	T	G	A	D	I	F	D	I	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T												T	T									S	S								T	T									S	S								S	S	S							S	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	I	G	T	S	T	A	F	V	T	I	T	D	A	A	V	G	D	K	L	D	L	V	G	I	S	T	N	G	A	I	A	D	G	A	F	G	A	A	V	T	L	G	A	A	A	T	L	A	Q	Y	L	D	A	A	A	A	G	D	G	S	G	T	S	V	A	K	W	F	Q	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S					S				T	T						G	G	G			S	S					S						B				T	T											T		S			S	S	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.
Sequence	G	G	D	T	Y	V	V	V	D	S	S	A	G	A	T	F	V	S	G	A	D	A	V	I	K	L	T	G	L	V	T	L	T	T	S	A	F	A	T	E	V	L	T	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T									S	S	S	S	S			T	T	T	S						S	S					S	S				S	S	S