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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6z6fA_

Fold library idPDB HeaderMoleculeTitle
c6z6fA_3.11PDB header: gene regulationChain: A: PDB Molecule: histone deacetylase hda1;


Added to library: Sat Feb 20 08:29:31 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RQVIVPVCMPKIHYSPLKTGLCYDVRMRYHAKIFTSYFEYIDPHPEDPRRIYRIYKILAENGLINDPTLS
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Known secondary structure (DSSP)



S







SSSS


TTSS







GGGGGS

SS
TTTTTSS

SS
S
 .........80.........90.........100.........110.........120.........130.........140
Sequence GVDDLGDLMLKIPVRAATSEEILEVHTKEHLEFIESTEKMSREELLKETEKGDSVYFNNDSYASARLPCG
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Known secondary structure (DSSP)

S


SS






TTS
STT

SSS



TT
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence GAIEACKAVVEGRVKNSLAVVRPPGHHAEPQAAGGFCLFSNVAVAAKNILKNYPESVRRIMILDWDIHHG
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Known secondary structure (DSSP) TTSSS



S

SS

SSS

SS
SS
S
TTT



SSS

 .........220.........230.........240.........250.........260.........270.........280
Sequence NGTQKSFYQDDQVLYVSLHRFEMGKYYPGTIQGQYDQTGEGKGEGFNCNITWPVGGVGDAEYMWAFEQVV
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Known secondary structure (DSSP) TTT
SS

TTTSTT

STTSTT



GGGTT
SSS


T
 .........290.........300.........310.........320.........330.........340.........350
Sequence MPMGREFKPDLVIISSGFDAADGDTIGQCHVTPSCYGHMTHMLKSLARGNLCVVLEGGYNLDAIARSALS
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Known secondary structure (DSSP)

S


TTBTT
SSS


B
SSS



S
 .........360.........370.........380.........390.........400.........410.........420
Sequence VAKVLIGEPPDELPDPLSDPKPEVIEMIDKVIRLQSKYWNCFRRRHANSGPINDSIISKNFPLQKAIRQQ
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Known secondary structure (DSSP) T





S
S





STTTTTSS





SS
TTS



 .........430.........440.........450.........460.........470.........480.........490
Sequence QQHYLSDEFNFVTLPLVSMDLPDNTVLCTPNISESNTIIIVVHDTSDIWAKRNVISGTIDLSSSVIIDNS
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Known secondary structure (DSSP)





SS
S
STT
SSGGG
S




SSSSS

S
 .........500.........510.........520.........530.........540.........550.........560
Sequence LDFIKWGLDRKYGIIDVNIPLTLFEPDNYSGMITSQEVLIYLWDNYIKYFPSVAKIAFIGIGDSYSGIVH
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Known secondary structure (DSSP) STTT




SS
SS
TGGG
SS


SS

 .........570.........580.........590.........600.........610.........620.........630
Sequence LLGHRDTRAVTKTVINFLGDKQLKPLVPLVDETLSEWYFKNSLIFSNNSHQCWKKPRKKFGRVLRCDTDG
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Known secondary structure (DSSP) SS

TTTSS






SS
SS

SS
SS




GGG


SS
S
 .........640.........650.
Sequence LNNIIEERFEEATDFILDSFE
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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