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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6z01A_

Fold library idPDB HeaderMoleculeTitle
c6z01A_1.90PDB header: dna binding proteinChain: A: PDB Molecule: dna topoisomerase i;


Added to library: Sat Nov 20 08:47:20 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KWRTLVHNGVALPPPYQPKGLSIKIRGETVKLDPLQEEXAYAWALKKDTPYVQDPVFQKNFLTDFLKTFN
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Known secondary structure (DSSP)

S




B









TT

TTTSGGGG
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GRFQDVTINEIDFSEVYEYVERERQLKADKEYRKKISAERKRLREELKARYGWAEXDGKRFEIANWXVEP
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Known secondary structure (DSSP) STTTT

GGG
TS
SSSTTTTSTTBS

B


 .........150.........160.........170.........180.........190.........200.........210
Sequence PGIFXGRGNHPLRGRWKPRVYEEDITLNLGEDAPVPPGNWGQIVHDHDSXWLARWDDKLTGKEKYVWLSD
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Known secondary structure (DSSP)



SS

TTTT




GGG


TTS


SS

S

TT


S
TTT


BSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence TADIKQKRDKSKYDKAEXLENHIDRVREKIFKGLRSKEPKXREIALACYLIDRLAXRVGDEKDPDEADTV
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Known secondary structure (DSSP) STTTT
SS

B
S



TTTTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence GATTLRVEHVKLLEDRIEFDFLGKDSVRWQKSIDLRNEPPEVRQVFEELLEGKKEGDQIFQNINSRHVNR
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Known secondary structure (DSSP) BGGG
BGGG
SS
GGG

TTS
TTT

TT
BS
SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence FLGKIVKGLTAKVFRTYIATKIVKDFLAAIPREKVTSQEKFIYYAKLANLKAAEALNHKRAPPKNWEQSI
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Known secondary structure (DSSP) STT

TS
GGG

STT
B



TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence QKKEERVKKLXQQLREAESEKKKARIAERLEKAELNLDLAVKVRDYNLATSLRNYIDPRVYKAWGRYTGY
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Known secondary structure (DSSP) T

STTTB

TS

S
 .........500.........510.........520.
Sequence EWRKIYTASLLRKFKWVEKASVKHVLQYFAE
Predicted secondary structure





SS confidence






























Known secondary structure (DSSP)
GGGGS
TGGGGTS

T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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