PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6yguC_

Fold library id	PDB Header	Molecule	Title
c6yguC_	1.99	PDB header: rna binding protein	Chain: C: PDB Molecule: atp dependent rna helicase (dob1)-like protein;

Links to external resources
Added to library: Sat May 8 08:55:16 2021

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M D E A L I K D Y H S I R E Q I D Q Y T K D M V L V M Q H P T N C V K Y I N P G R L M H V V T S D G T D F G W G V I I N F Y E R R P E R N N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S G G G
T T
T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P N P G W S P Q E S Y V V E V L L R L S S D S G S V D S K L K D N Q C I P A G I A P V T Q K N D P G R W E V V P C L L S C M H G L S Q I K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G S
T T
S S
S S
S S
S S
B
S S S
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence H V P D K K S G G S M D D P E T R R R V G K S L L E V Q R R F E D G I P H M D P I E N M H I R D V E F K K L L R K I E V L E S R L V A N P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S S G G G S
T T
B
T T T T T
S T T

. . . . .

Sequence H N S G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	D	E	A	L	I	K	D	Y	H	S	I	R	E	Q	I	D	Q	Y	T	K	D	M	V	L	V	M	Q	H	P	T	N	C	V	K	Y	I	N	P	G	R	L	M	H	V	V	T	S	D	G	T	D	F	G	W	G	V	I	I	N	F	Y	E	R	R	P	E	R	N	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																										S					G	G	G			T	T								T	T																			S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	N	P	G	W	S	P	Q	E	S	Y	V	V	E	V	L	L	R	L	S	S	D	S	G	S	V	D	S	K	L	K	D	N	Q	C	I	P	A	G	I	A	P	V	T	Q	K	N	D	P	G	R	W	E	V	V	P	C	L	L	S	C	M	H	G	L	S	Q	I	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S						G	G	G	S											T	T						S	S			S	S		S	S		S	S			B			S	S	S												G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	H	V	P	D	K	K	S	G	G	S	M	D	D	P	E	T	R	R	R	V	G	K	S	L	L	E	V	Q	R	R	F	E	D	G	I	P	H	M	D	P	I	E	N	M	H	I	R	D	V	E	F	K	K	L	L	R	K	I	E	V	L	E	S	R	L	V	A	N	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	T	T	S	S	G	G	G	S																			T	T				B			T	T	T	T	T																								S	T	T
	.	.	.	.	.
Sequence	H	N	S	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)