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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6xm1A_

Fold library idPDB HeaderMoleculeTitle
c6xm1A_2.80PDB header: transport proteinChain: A: PDB Molecule: vps45;


Added to library: Sat Aug 22 11:30:06 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDIVQAAVGYVNRMVTAGGGAKMKILLLDRDTLPFISTAVSQSTLLNHEVYLMDRIDNQNREKMRHLRCL
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Known secondary structure (DSSP)

TT
S





TT

TTTTT
TT



TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence CFLRPTLDSVGLLVDELREPKYGEYHLFFSNVVKKSTLERLAEADDHEVVKVVQELFLDYSVINPDLFSL
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Known secondary structure (DSSP)


S

SSSS



TT





STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NMSLPTHRLWSGSPDMWNADSLQRATEGIIAVLLSLKKRPLIRYQKTSGLARRLAHEVRTFVSKEEQLFD
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Known secondary structure (DSSP)


TTT

SB
SSTTSB
TT



TT
TTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence FRRVDTPPILLILDRREDPVTPLLMQWTYQAMVHHLLGINNGRVDMSSVPDIRPELKEIVLSQDQDPFFK
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Known secondary structure (DSSP)



SS

GGG

SGGGS


ST
TT
TTSTT

GGGS

TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence KNMYLNFGDLGSNIKDYVEQYQSRTKSTHDIESIADMKRFMEEYPEFRKLSGNVSKHVTLVSELSRRVGA
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Known secondary structure (DSSP) TT




GGG

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence ENLLEVSELEQSIACNDNHSSDLKTLQSHLSNPSIPPQNKLILVALYALRYAKHPSNSLPILLDLLTAAA
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Known secondary structure (DSSP) T
S
TT
TTS
TTSTT

TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence GVPARQVALIPKLLTYHRSLHAAQLFEGGRFKGLKGVENVYTQHSPKMEGTLHQLVKGRLRESQFPFVDT
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Known secondary structure (DSSP)


TS










STT

S

GGG



T


TTTS

 .........500.........510.........520.........530.........540.........550......
Sequence TDKPQDIIVFMIGGATYEEAKLVAGINASVPGVRVVLGGTSVVNAKEFLAEVEDAVDGWGGLDLSG
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Known secondary structure (DSSP)



T
B
STTS
B

TTTS





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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