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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6xj9A_

Fold library idPDB HeaderMoleculeTitle
c6xj9A_2.00PDB header: hydrolaseChain: A: PDB Molecule: agarase;


Added to library: Sat Sep 19 08:59:41 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FADDTHHTTSVDYQSNSAIVKNENSVLNVQFQSKKNSYASIVFSPEKPWDWSEFNDFNLAFELANPGTHS
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Known secondary structure (DSSP)





STT
TTT
S

SS
B

TT

S
SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VQIYLDISDIDGANYTRSVNVPVGGYNTYYAKLDGHDLAFTSGLRSNPDTWESDEVQFISMWGKKNLNLK
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Known secondary structure (DSSP) TTS

S
SSGGG

TTS
SS


SS

SS


S

TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence GIAKIAISVQSTLHDKELAIKSISLRKNPQFNTAFLTKIVDEFGQNAKQEFAGKVHSEAELLSDKKQEAT
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Known secondary structure (DSSP)
S
SS





TTTTSS
B
TTSSBSSS

TT


STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence QLLSKRPTNRSRFGGWAEGPKLEATGYFRTAKYNDKWSLVDPDGYLYLATGIDIIRLANSTTLTGYDFDQ
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Known secondary structure (DSSP) T

SS

TTB
TTS
BTTS
B



SS
TT
TTSB
S

SSTT


S

G
 .........290.........300.........310.........320.........330.........340.........350
Sequence ALLANQVNKEALKSRFVASQVRKNLFEWLPDYSDTLGKHFGYRKSAHSGPLEHGETYSFYAANLERKYGQ
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Known secondary structure (DSSP) GG





TT
S
TTBS



TTSGGGGGS


SSS
SS

G
 .........360.........370.........380.........390.........400.........410.........420
Sequence NNADYMQKWREVTLDRMITWGFSSLGNWTDPSYYDNQKVPYFANGWIIGDFKTVSSGNDFWGAMPDVFDP
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Known secondary structure (DSSP) GG

T
S
B
SS

GGGTT
SSS



SSS

S
TTT

TTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence EFTVRANETVSVVAKEVKNSPWAVGVFIDNEKSFGRPDSVKSHYGIVINTLGRDAKTVPTKAEFSRLMKE
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Known secondary structure (DSSP) TT
TTS
S




TTSSTS
TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence KYTDVAELNKVWHLNLASWAEFDKGVTIDIKNEEQLVDFSILLTAYADKYFSVVNAAMDKYLPNHMYLGA
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Known secondary structure (DSSP) SST


S





TT
STTSTTS


 .........570.........580.........590.........600.........610.........620.........630
Sequence RFPDWGMPIEVVKASAKYVDVISFNAYKEGLRDDKWAFLSQFDKPAIIGEFHVGSSDSGLFHPGLIHAAN
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Known secondary structure (DSSP)
TTS

TT
SS

SSS

GGGGGTT






B
GGGS
SB

SSB
SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence QQDRANMYTDYMNSVIDNPYFIGAHWFQYIDSPITGRAYDGENYNVGFISVTDRPYIEMIEAAKAMNESM
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Known secondary structure (DSSP) T
SSS
SB


TT

TTT


B


SB
TTS
B
 ......
Sequence YERRFK
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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