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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6xeoA_

Fold library idPDB HeaderMoleculeTitle
c6xeoA_5.50PDB header: dna binding protein, hydrolase/dnaChain: A: PDB Molecule: transcription-repair-coupling factor;


Added to library: Sat Aug 22 09:02:40 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWE
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Known secondary structure (DSSP)






STT
B

B
S

STSSS





SST
SS
B






 .........80.........90.........100.........110.........120.........130.........140
Sequence TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQ
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Known secondary structure (DSSP) S
TT
S



TTTTT
SSSB



S



TS


S
SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence LDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPA
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Known secondary structure (DSSP) T


BSS

STT

TTB

SSSSS




TT




TTTT
S



 .........220.........230.........240.........250.........260.........270.........280
Sequence HEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN
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Known secondary structure (DSSP) SSS






S
TTSTS


SGGGGGGGGSSSS



GGGTS
TT


 .........290.........300.........310.........320.........330.........340.........350
Sequence TGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLG
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Known secondary structure (DSSP)
S
TT
SSS



S

TTS

B
SS




TT



S
 .........360.........370.........380.........390.........400.........410.........420
Sequence FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY
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Known secondary structure (DSSP)






TTSSSSTTT





B



TTTTTT






SSS


TT


 .........430.........440.........450.........460.........470.........480.........490
Sequence LMIGAAEHGFVDTVRNLALICESDLLGERIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL
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Known secondary structure (DSSP) B




S

SSS

B








TTT
SSSBGGGB

 .........500.........510.........520.........530.........540.........550.........560
Sequence YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ
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Known secondary structure (DSSP)
GGGGGG

S
TTTSS



SSSSTS









 .........570.........580.........590.........600.........610.........620.........630
Sequence YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT
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Known secondary structure (DSSP) TT
SS


SSS



B



SSTTSSSGGGTT
B

SSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD
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Known secondary structure (DSSP) T
SSS

B



S




S


TT
TTS



SSB





 .........710.........720.........730.........740.........750.........760.........770
Sequence EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR
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Known secondary structure (DSSP)


SS
TTS
TT






SS
S
TS
B




S
SS






S
 .........780.........790.........800.........810.........820.........830.........840
Sequence EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT
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Known secondary structure (DSSP) TTTT







SSS
STTS
B



TTS

SSSB



S
 .........850.........860.........870.........880.........890.........900.........910
Sequence IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL
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Known secondary structure (DSSP) TTT




SS





S
SSS

TTS


SSS






TTTS
T
S
S
 .........920.........930.........940.........950.........960.........970.........980
Sequence GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMP
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Known secondary structure (DSSP) STTT



TT
T

S

TT
S










 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE
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Known secondary structure (DSSP)



TTS




ST



T

 .........1060.........1070.........1080.........1090.........1100.........1110........
Sequence GNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAI
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Known secondary structure (DSSP) TT

SSSS

T
SSS
TTT




SS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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