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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6x9oA_

Fold library idPDB HeaderMoleculeTitle
c6x9oA_2.60PDB header: protein bindingChain: A: PDB Molecule: huntingtin;


Added to library: Sat Jun 20 08:38:04 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TKKDRVNHCLTICENIVAQSVRNSPEFQKLLGIAMELFLLCSDDAESDVRMVADECLNKVIKALMDSNLP
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Known secondary structure (DSSP)

TTS
S

SSTTGGG
SSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence RLQLELYKEIKKNGAPRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRTSKRPEESVQETLAAAVPK
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Known secondary structure (DSSP) TT

TTGGGS
TTST


 .........150.........160.........170.........180.........190.........200.........210
Sequence IMASFGNFANDNEIKVLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNVLLGLLVPVED
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Known secondary structure (DSSP) GGG

GGGG
S
TSSSTTS
SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence EHSTLLILGVLLTLRYLVPLLQQVSPSAEQLVQVYELTLHHTQHQDHNVVTGALELLQQLFRTPPPELLQ
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Known secondary structure (DSSP)


SGGG






TT
SSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence TLTAVGGIGQLCRIKGDIGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVKALALSCVGAA
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Known secondary structure (DSSP) SSSGGGG




SB


TT
SSS
TB
SSSS
B

TTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VALHPESFFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILCGTLICSILSRSRFHVGDWMG
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Known secondary structure (DSSP)
GGGGGSBS
SB


TTT

S

BGGGGGGGGG
SSTTTTTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence TIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRNCVMSLCSSSYSELGLQLIIDVLTLRNSSYW
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Known secondary structure (DSSP) T




GGGST
S
TSTTGGGGG
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LVRTELLETLAEIDFRLVSFLEAKAENLHRGAHHYTGLLKLQERVLNNVVIHLLGDEDPRVRHVAAASLI
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Known secondary structure (DSSP) T


SSTTTTGGG
SS


TTTGGGG
SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence RLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHETRIYRGYNLLPSITDVTMENNLSRVIAAVSHELI
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Known secondary structure (DSSP) GGG


TT
SS
SST









TT


S




 .........640.........650.........660.........670.........680.........690.........700
Sequence TSTTRALTFGCCEALCLLSTAFPVCIWSLGWHCCTVGMATMILTLLSSAWFPLDLSAHQDALILAGNLLA
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Known secondary structure (DSSP) T

SS
TTTSTTTT



STSSSGGGS
 .........710.........720.........730.........740.........750.........760.........770
Sequence ASAPKSLRSEVWPALGDRALVPMVEQLFSHLLKVINICAHVLDDVAPGSLGSFYHLPSYLKLHDVLKATH
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Known secondary structure (DSSP) TTGGGS




STT


TTSTT





S

TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence ANYKVTLDLQNSTEKFGGFLRSALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLK
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Known secondary structure (DSSP) TT


TT

S
GGG

TTTTTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence TLFGTNLASQFDRPGLYHYCFMAPYTHFTQALADASLHIRLFEPLVIKALKQYTTTTCVQLQKQVLDLLA
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Known secondary structure (DSSP) TT
STTTS




SSTTTTTT

GGGG


 .........920.........930.........940.........950.........960.........970.........980
Sequence QLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERYHSKQIIGIPKIIQL
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Known secondary structure (DSSP) TT


SSST
STT
TTT
BSSSSBSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence CDGIMASGRKAVTHAIPALQPIVHDLFVLRGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENE
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Known secondary structure (DSSP) SSS
TTTTT



TTTS
T
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence DKWKRLSRQIADIILPMLAKQQMHIDSHEALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQ
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Known secondary structure (DSSP) TT
S


SS
GGGGSSTS


S
SSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LWISGILAILRVLISQSTEDIVLSRIQELSFSPYLISCTVINRLRDGDSKNLPEETFSRFLLQLVGILLE
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Known secondary structure (DSSP) S
TT

GGGG
S





 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence DIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFRSDGCGGSFYTLDSLNLRAR
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Known secondary structure (DSSP) SS
TTTTS
SSS
T


SSSSS

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence SMITTHPALVLLWCQILLLVNHTDYRWWAEVQQTPKKLGMCNREIVRRGALILFCDYVCQNLHDSEHLTW
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Known secondary structure (DSSP) TTTTT
TT


TTTTT






STT

 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LIVNHIQDLISLSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLSTPTMLKKTLQCLEGIHLSQSGAV
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Known secondary structure (DSSP) TTTST
TTTTTTTST

GGGTT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence LTLYVDRLLCTPFRVLARMVDILACRRVEMLLAANLQSSMAQLPMEELNRIQEYLQSSGLAQRHQRLYSL
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Known secondary structure (DSSP) TTSS
S
S
S
STS
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence LDRFRLSTMVSPDKDWYVHLVKSQCWTRSDSALLEGAELVNRIPAEDMNAFMMNSEFNLSLLAPCLSLGM
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Known secondary structure (DSSP)



SSS


SSTTS
GGGTTTTTTSTTS
GGG
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence SEISGGQKSALFEAAREVTLARVSGTVQQLPAVHHVFQPELPAEPAAYWSKLNDLFGDAALYQSLPTLAR
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Known secondary structure (DSSP) TTTS

TS
SS




SS
TTSS
TTTSSTTGGG
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence ALAQYLVVVSKLPSHLHLPPEKEKDIVKFVVATLEALSWHLIHEQIPLSLDLQAGLDCCCLALQLPGLWS
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Known secondary structure (DSSP) TTGGGS
GGGS

TTSSS

TTS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence VVSSTEFVTHACSLIHCVHFILEAVAVQPGEQLLSPQNPKYITAACEMVAEMVESLQSVLALGHKRNSGV
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Known secondary structure (DSSP) TSSTT

TT

SS




TTTTTTSTTSGGGTTS
 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence PAFLTPLLRNIIISLARLPLVNSYTRVPPLVWKLGWSPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRIN
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Known secondary structure (DSSP)
SSSTSTS
TT





SSSS






GGGTSS
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence TLGWTSRTQFEETWATLLGVLVRTQINVLAVQAITSLVLSAMTVPVAGNPAVSCLEQQPRNKPLKALDTR
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Known secondary structure (DSSP)

SS

TTTT
SSSTT
TTT




B
SS


SSSSSS
 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence FGRKLSIIRGIVEQEIQAMVSKRENIATHHLYQAWDPVPSLSGALISHEKLLLQINPERELGSMSYKLGQ
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Known secondary structure (DSSP)


SS

S

SS





B




B

GGG
TTTS
TTS
TT

S

TTS
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence VSIHSVWLGNSITPKHRAGVDIHSCSQFLLELYSRWILPRTPAILISEVVRSLLVVSDLFTERNQFELMY
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Known secondary structure (DSSP) B
TT




SSSS
TTS




TTT

S
 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence VTLTELRRVHPSEDEILAQYLVPATCKAAAVLGMDKAVAEPVSRLLESTLRSSHLPSRVGALHGILYVLE
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Known secondary structure (DSSP) S
S

SSSTT

SSSS
TS
SST
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence CDLLDDTAKQLIPVISDYLLSNLKGIAHCVNIHSQQHVLVMCATAFYLIENYPLDVGPEFSASIIQMCGV
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Known secondary structure (DSSP) T

TTSS

TTTS
SSSS

TTT

SSTTT
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence MLSGSEESTPSIIYHCALRGLERLLLSEQLSRLDAESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKV
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Known secondary structure (DSSP) TS
TTTS
SS
S
TTTSTSSTTTSS
SST

 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence IVAMERVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDIMNKVIGEFLSNQQPYPQFMATVVYKVFQ
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Known secondary structure (DSSP) S
S
GGGTS
SS
S
 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence TLHSTGQSSMVRDWVMLSLSNFTQRAPVAMATWSLSCFFVSASTSPWVAAILPHVISRMGKLEQVDVNLF
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Known secondary structure (DSSP) TTTT
TT

SSSTT

SSS

STTTGGGT
SS


 .........2390.........2400.........2410.........2420.....
Sequence CLVATDFYRHQIEEELDRRAFQSVLEVVAAPGSPYHRLLTCLRNV
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Known secondary structure (DSSP) TTT

GGG

TTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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