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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6x34D_

Fold library idPDB HeaderMoleculeTitle
c6x34D_4.70PDB header: transport protein/isomeraseChain: D: PDB Molecule: ryanodine receptor;


Added to library: Sat Jan 16 09:09:58 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FLRTDDEVVLQCNATVLKEQLKLCLAAEGFGNRLCFLEPTSNAQNVPPDLAICCFVLEQSLSVRALQEML
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP)


SS

SSS

SS

B
S
TTTS


TTSS




 .........80.........90.........100.........110.........120.........130.........140
Sequence ANGHRTLLYGHAILLRHAHSGMYLSCLTTSRSMTDKLAFDVGLQEDATGEACWWTTHPASKQRSEGEKVR
Predicted secondary structure


































SS confidence





































































Known secondary structure (DSSP)





BTT
TTT


S



TT
SS
B
S

SSTT

SSSS
TTSB

 .........150.........160.........170.........180.........190.........200.........210
Sequence VGDDLILVSVSSERYLHLSTASGELQVDASFMQTLWNMNPICSGCEEGYVTGGHVLRLFHGHMDECLTIS
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) SS

SSS


SSSS
SS


S


TTB
BTT

BB
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence PADSDDQRRLVYYEGGSVCTHARSLWRLEPLRISWSGSHLRWGQPLRIRHVTTGRYLALIEDQGLVVDAS
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)
SSSSSTT
SSSTTSSSGGG
BB


SSSS
TTSB

TT




B
SSS





BTTTB



ST
 .........290.........300.........310.........320.........330.........340.........350
Sequence KAHTKATSFCFRISKEKLKRDVEGMGPPEIKYGESLCFVQHVASGLWLTYAALKKKAILHQEGHMDDALS
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP) T

TTTS


SSSS



SSSSS




BTTS




SSS

B












TT

TT



 .........360.........370.........380.........390.........400.........410.........420
Sequence LTRCQQEESQAARMIYSTAGLYNHFIKGLDSFSGKPRGSGAPAGTALPLEGVILSLQDLIGYFEPPSEEL
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)
B


S


SS


S



S



TTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence QHEEKQSKLRSLRNRQSLFQEEGMLSLVLNCIDRLNVYTTAAHFAEFAGEEAAESWKEIVNLLYEILASL
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP)
TTTTSSST
TTSSTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence IRGNRANCALFSNNLDWLVSKLDRLEASSGILEVLYCVLIESPEVLNIIQENHIKSIISLLDKHGRNHKV
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) TT
TTS

TSSSS
TT

S


 .........570.........580.........590.........600.........610.........620.........630
Sequence LDVLCSLCVCNGVAVCSNQDLITENLLPGRELLLQTNLINYVTSIRPNIFVGRAEGTTQYSKWYFEVMVD
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) B
SS
B
STTT
SSS







S


B

TT
SS
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence EVVPFLTAQATHLRVGWALTEGYSPYPGGGEGWGGNGVGDDLYSYGFDGLHLWTGHVPRLVTSPGQHLLA
Predicted secondary structure
























































SS confidence





































































Known secondary structure (DSSP)

TTSSSS



SSS



SS

BSSS


TTSSTTTTSSS



SS




 .........710.........720.........730.........740.........750.........760.........770
Sequence PEDVVSCCLDLSVPSISFRINGCPVQGVFEAFNLNGLFFPVVSFSAGVKVRFLLGGRHGEFKFLPPPGYA
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) TT

SSS


TT
S

S



SB

TT


SSSSS


S


TT

 .........780.........790.........800.........810.........820.........830.........840
Sequence PCHEAVLPRERLRLEPIKEYRREGPRGPHLVGPSRCLSHTDFVPCPLPPHLERIREKLAENIHELWALTR
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) BTTSS

TTS



SS



SSS







TTTTS




 .........850.........860.........870.........880.........890.........900.........910
Sequence IEQGWTYGPVRDDNKRLHPCLVDFHSLPEPERNYNLQMSGETLKTLLALGCHVGMADEKAEDNLRKTKLP
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP) TT

SS
BTTTTSS
S
TTTS
TT





TTTT

S



SS
 .........920.........930.........940.........950.........960.........970.........980
Sequence KTYMMSNGYKPAPLDAQTTLVDRLAENGHNVWARDRVAQGWSYSAVQDIPARRNPRLVPYRLLDEATKRS
Predicted secondary structure







































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Known secondary structure (DSSP) S
SS
SS
S
SS



T


B
SSS

TTTB
SS

TT
SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence NRDSLCQAVRTLLGYGYNIERVRIFRAEKSYAVQSGRWYFEFEAVTTGEMRVGWARPELRPDVELGADEL
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP) SS



SSS
BSSSSS
SS


SS

SSS
TTSSTT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence AYVFNGHRGQRWHLGSELFGRPWQSGDVVGCMIDLTENTIIFTLNGEVLMSDSGSETAFRDIEVGDGFLP
Predicted secondary structure

































SS confidence





































































Known secondary structure (DSSP) S

STT

SSS



S



SS
TTTTTT


SS

S
SS
S



S
B
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence VCSLGPGQVGHLNLGQDVSSLRFFAICGLQEGFEPFAINMQRPVTTWFSKSLPQFEAVPLEHPHYEVSRV
Predicted secondary structure






































SS confidence





































































Known secondary structure (DSSP)
TT



SSTT
SSGGGT



TTSS
SS



S


S

TT
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence DGTVDTPPCLRLTHRSLVEMLFLRLSLPVQFHQLNTTTYYYSVRVFAGQEPSCVWVGWVTPDYHQHDMNF
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)


SSS











SS
B






S

SSS
TTS

TT




S

 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence DLTKVRAVTVTMGDNIHSSLKCSNCYMVWGGDFVSHTDLVIGCLVDLATGLMTFTANGKESNTFFQVEPN
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)
TTSS




B

B



B

SB




SS





SSS

TT


SS
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence TKLFPAVFVLPTHQNVIQFELGKQKNIMPLSAAMFLSERKNPAPQCPPRLEMQMLMPVSWSRMPNHFLRV
Predicted secondary structure










































SS confidence





































































Known secondary structure (DSSP)

B

TTSS


SSS

SSSSS






TT


SS

S




 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence ETRRAGERLGWAVPLTMMALHIPEENRCMDILELSERLDLQQFHSHTLRLYRAVCALGNNRVAHALCSHV
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)



BTTTBS





TTT
B

BSSS
SS
S
SS

S
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence DQAQLLHALEDAHLPGPLRAGYYDLLISIHLESACRSRRSMLSEYIVPLTPETRAITLFPPRHGLPGVGV
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)

SS

SSTTTT



GGGGG

SS





TT
S
 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence TTSLRPPHHFSAPCFVAALPEAPARLSPSIPLEALRDKALRMLGEAVRDGGQHARDPVGGSVEFQFVPVL
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP)

S



























T
SS
GGGS
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence KLVSTLLVMGIFGDEDVKQILKMIEPEVEEGLLQMKLPESVKLQMCNLLEYFCDQELQHRVESLAAFAER
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) TT
S

S




TTSS


 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence YVDKLQANQRDRYGILMKAFTMTAAETARRTREFRSPPQEQINMLLHFKPLPDEIRQDLLEFHQDLLTHC
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) S


SSS
S





 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence GIQLQSLQELVSHTVVRWAQEDFVQSPELVRAMFSLLHRQYDGLGELLRALPRAYTISPSSVEDTMSLLE
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) T




S





TTTT

TT
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence CLGQIRSLLIVQMGPQEENLMIQSIGNIMNNKVFYQHPNLMRALGMHETVMEVMVNVLRFPKMVTSCCRF
Predicted secondary structure








SS confidence





































































Known secondary structure (DSSP) S


T
SGGGT
T


 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence LCYFCRISRQNQRSMFDHLSYLLENSGSTPLDVAAASVIDNNELALALQEQDLEKVVSYLAGCGLQSCPM
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) TS
GGG


SS
SS

TTS

 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence LLAKGYPDIGWNPCGGERYLDFLRFAVFVNGESVEENANVVVRLLIRKPECFGPALRLLATIEEAIAIMS
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP) S
SS

SS
BSSS
B
T
GGGS
SS




 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence FYAALIDLLGRCAPEMHLIQAGKGEALRIRAILRSLVPLDDLVGIISLPLQIPTMSASFVPDHKASMVLF
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) TS


SS
SS
TS







SS

 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence LDRVYGFLLHVLDVGFALALNRYLCLAVLPLITKCAPLFAMVDSMLHTVYRLSRGRSLTKAQRDVIEECL
Predicted secondary structure


SS confidence





































































Known secondary structure (DSSP) T





TTTTT



SSS
 .........2180.........2190.........2200.........2210.........2220.........2230.........2240
Sequence MALCRYIRPSMLQHLLRRLVFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPR
Predicted secondary structure


















































SS confidence





































































Known secondary structure (DSSP) TTSSS
TT

TTT



GGG



 .........2250.........2260.........2270.........2280.........2290.........2300.........2310
Sequence PVETLNVIIPEKLDSFINKFAEYTHEKWAFDKIQNNWSYGENIDEELKTHPMLRPYKTFSEKDKEIYRWP
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP)



SS



GGGTTT

SS
BTTTTTT
S
GGG

 .........2320.........2330.........2340.........2350.........2360.........2370.........2380
Sequence IKESLKAMIAWEWTIEKAREGEYNPQPPDLSGVTLSRELQAMAEQLAENYHNTWGRKKKQELEAKGGGTH
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP) TT

S










TT



TT



 .........2390.........2400.........2410.........2420.........2430.........2440.........2450
Sequence PLLVPYDTLTAKEKARDREKAQELLKFLQMNGYAVTRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure







































SS confidence





































































Known secondary structure (DSSP) TT
S
STTS
TT



 .........2460.........2470.........2480.........2490.........2500.........2510.........2520
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP)

TT

TT




 .........2530.........2540.........2550.........2560.........2570.........2580.........2590
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure





































































SS confidence





































































Known secondary structure (DSSP) STTTS









 .........2600.........2610.........2620.........2630.........2640.........2650.........2660
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFSVLCRDLYALYPLLIRYVDNNRAHWLTEPNPS
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)






S

 .........2670.........2680.........2690.........2700.........2710.........2720.........2730
Sequence AEELFRMVGEIFIYWSKSHNFKREEQNFVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP)
TT







TT
 .........2740.........2750.........2760.........2770.........2780.........2790.........2800
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXXXPLYNLPTHRACNMFLESYKAAWILTEDHSFEDRMIDDLSKAK
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP)




TT

TTT



TT


 .........2810.........2820.........2830.........2840.........2850.........2860.........2870
Sequence KPDPLHQLVLHFSRTALTEKSKLDEDYLYMAYADIMAKSCHLSFEEKEMEKQRLLYQQARLHNRGAAEMV
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)


TTTSSS







TTT
 .........2880.........2890.........2900.........2910.........2920.........2930.........2940
Sequence LQMISACKGETGAMVSSTLKLGISILNGGNADVQQKMLDYLKDKKEVGFFQSIQALMQTCSVLDLNAFER
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) TSS


SSS

STTTTS

TTT




 .........2950.........2960.........2970.........2980.........2990.........3000.........3010
Sequence QNKAEGLGEKVMADDEFTQDLFRFLQLLCEGHNNDFQNYLRTQTGNTTTINIIICTVDYLLRLQESISDF
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) T



S


TTTGGGTT



SSSSS


 .........3020.........3030.........3040.........3050.........3060.........3070.........3080
Sequence YWYYSGKDVIEEQGKRNFSKAMSVAKQVFNSLTEYIQGPCTGNQQSLAHSRLWDAVVGFLHVFAHMMMKL
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) SSSSS

TSSS
STT
 .........3090.........3100.........3110.........3120.........3130.........3140.........3150
Sequence AQDSSQIELLKELLDLQKDMVVMLLSLLEGNVVNGMIARQMVDMLVESSSNVEMILKFFDMFLKLKDIVG
Predicted secondary structure





SS confidence





































































Known secondary structure (DSSP)
GGGTSS

TTSTTGGGTTT
 .........3160.........3170.........3180.........3190.........3200.........3210.........3220
Sequence SEAFQDYVTDPRGLISKKDFQKXXXXXXEFANRFQEPARDIGFNVAVLLTNLSEHVPHDPRLRNFLELAE
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) S


SSSS

S
SS


TTTT


SSSSSS

T
 .........3230.........3240.........3250.........3260.........3270.........3280.........3290
Sequence SILEYFRPYLGRIEIMGASRRIERIYFEISETNRAQWEMPQVKESKRQFIFDVVNEGGESEKMELFVSFC
Predicted secondary structure










SS confidence





































































Known secondary structure (DSSP) TSTT


TT





S
TTS
S
 .........3300.........3310.........3320.........3330.........3340.........3350.........3360
Sequence EDTIFEEVQRVKFLNYLSRNFYTLRFLALFLAFAINFILLFYKVSDSPVYYFLEESTGYMEPALRCLSLL
Predicted secondary structure









SS confidence





































































Known secondary structure (DSSP)

TTT



S








SSSSSST
 .........3370.........3380.........3390.........3400.........3410.........3420.........3430
Sequence HTLVAFLCIIGYNCLKVPLVIFKREKELARKLEFDGLYITEQPVKGQWDRLVLNTPSFPSNYWDKFVKRK
Predicted secondary structure
















SS confidence





































































Known secondary structure (DSSP) TTTSS
SSSSS


TTTTTTSSS

TTSS
S

TTT
 .........3440.........3450.........3460.........3470.........3480.........3490.........3500
Sequence VLDKHGDIYGRERIAEGLLTWLMSIDVKYQIWKFGVIFTDNSFLYLGWYMVMSLLGHYNNFFFAAHLLDI
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP) STT

TTS

GGGSSS

 .........3510.........3520.........3530.........3540.........3550.........3560.........3570
Sequence AMGVKTLRTILSSVTHNGKQLVMTVGLLAVVVYLYTVVAFNFFRKFYNKSEDEDEPDMKCDDMMTCYLFH
Predicted secondary structure












SS confidence





































































Known secondary structure (DSSP) TSSSTTTTTTTTSS




SSS
TT
GGGS
 .........3580.........3590.........3600.........3610.........3620.........3630.........3640
Sequence MYVGVRAGGGIGDEIEDPAGDEYELYRVVFDITFFFFVIVILLAIIQGLIIDAFGELRDQQEQVREDMET
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP)
S
GGGTS




STTTTT
 .........3650.........3660.........3670.........3680.........3690.........3700.........3710
Sequence KCFICGIGSDYFDTTPHRFETHTLEEHNLANYMFFLMYLINKDETEHTGQESYVWKMYQERCWDFFPAGD
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)

TTTSS
S
GGGTSTT
TTTTS


STS
GGG

TT

TTS

S
 .....
Sequence CFRKQ
Predicted secondary structure

SS confidence




Known secondary structure (DSSP)
TTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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