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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6ww7A_

Fold library idPDB HeaderMoleculeTitle
c6ww7A_3.40PDB header: membrane proteinChain: A: PDB Molecule: er membrane protein complex subunit 1;


Added to library: Sat May 30 08:38:34 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EDQVGKFDWRQQYVGKVKFASLEFSPGSKKLVVATEKNVIAALNSRTGEILWRHVDKGTAEGAVDAMLLH
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Known secondary structure (DSSP)


TTSS




S

S
SSS

TTS
TTT



SSGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence GQDVITVSNGGRIMRSWETNIGGLNWEITLDSGSFQALGLVGLQESVRYIAVLKKTTLALHHLSSGHLKW
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Known secondary structure (DSSP) TTTTTTTTT
S

SS

SSSTTSSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence VEHLPESDSIHYQMVYSYGSGVVWALGVVPFSHVNIVKFNVEDGEIVQQVRVSTPWLQHLSGACGVVDEA
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Known secondary structure (DSSP)
TTTTT

TTS
TTS
TTT



SS


SSSS
TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence VLVCPDPSSRSLQTLALETEWELRQIPLQSLDLEFGSGFQPRVLPTQPNPVDASRAQFFLHLSPSHYALL
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Known secondary structure (DSSP) TTTTTTT

S
STTTT



TT





SSSSS


STT
 .........290.........300.........310.........320.........330.........340.........350
Sequence QYHYGTLSLLKNFPQTALVSFATTGEKTVAAVMACRNEACFNQTYTINLYLVETGRRLLDTTITFSLEQS
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Known secondary structure (DSSP) TTT
STT

S



SSSSSS


SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence GTRPERLYIQVFLKKDDSVGYRALVQTEDHLLLFLQQLAGKVVLWSREESLAEVVCLEMVDLPLTGAQAE
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Known secondary structure (DSSP) S


TTS
TTS
S
STT
GGGGG



TTTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LEGEFGKKADGLLGMFLKRLSSQLILLQAWTSHLNIDTLARDEFNLQKMMVMVTASGKLFGIESSSGTIL
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Known secondary structure (DSSP) SSS

SS


SS



SS


TTSTTT

 .........500.........510.........520.........530.........540.........550.........560
Sequence WKQYLPNVKPDSSFKLMVQRTTAHFPHPPQCTLLVKDKESGMSSLYVFNPIFGKWSQVAPPVLKRPILQS
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Known secondary structure (DSSP)
TT

TT

TTSSSS


TTT


TTT

B
SS





S


 .........570.........580.........590.........600.........610.........620.........630
Sequence LLLPVMDQDYAKVLLLIDDEYKVTAFPATRNVLRQLHELAPSIFFYLVDAEQGRLCGYRLRKDLTTELSW
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Known secondary structure (DSSP)
TT


SS
BS

TTGGG
TTTT
TTSB
 .........640.........650.........660.........670.........680.........690.........700
Sequence ELTIPPEVQRIVKVKGKRSSEHVHSQGRVMGDRSVLYKSLNPNLLAVVTESTDAHHERTFIGIFLIDGVT
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Known secondary structure (DSSP)

TTT

SS


S
S
STT
B


TTS


TTT
TTT
 .........710.........720.........730.........740.........750.........760.........770
Sequence GRIIHSSVQKKAKGPVHIVHSENWVVYQYWNTKARRNEFTVLELYEGTEQYNATAFSSLDRPQLPQVLQQ
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Known secondary structure (DSSP)

S
SSTTTT

SS
S
SS


TTS

S

 .........780.........790.........800.........810.........820.........830.........840
Sequence SYIFPSSISAMEATITERGITSRHLLIGLPSGAILSLPKALLDPRRPEIPTEQSREENLIPYSPDVQIHA
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Known secondary structure (DSSP) SS

S


SS

S


TTS
GGGS
TT

SS

TT




SB



G
 .........850.........860.........870.........880.........890.........900.........910
Sequence ERFINYNQTVSRMRGIYTAPSGLESTCLVVAYGLDIYQTRVYPSKQFDVLKDDYDYVLISSVLFGLVFAT
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Known secondary structure (DSSP) GG
SSSS


TT



SSSS
SSS
TT

TTS

SS

 .........920.......
Sequence MITKRLAQVKLLNRAWR
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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