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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6wmtZ_

Fold library idPDB HeaderMoleculeTitle
c6wmtZ_4.43PDB header: transcriptionChain: Z: PDB Molecule: rna polymerase sigma factor rpod;


Added to library: Sat Nov 14 08:52:59 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LKGKTSDPIRMYMREMGIVDLLDKKGETDIAIRIEEGTTEVFSTILSYPIVIKTYIERFRELEEKAIDYM
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Known secondary structure (DSSP)






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TS
 .........80.........90.........100.........110.........120.........130.........140
Sequence NSENEPVARYIRFNETQRAYEFFTNLEKMFEEYQDKPNKKLYTKIVKEFDNLRLSTSHLQKLVDYIRLPY
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SSSS


S
SSS


S
 .........150.........160.........170.........180.........190.........200.........210
Sequence ARVKEFERKILRLCVERSKTPRQEFIKVYKVGSLEWLEPLTKKYKFTENTIREIKNLTKQINQFQILMMM
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Known secondary structure (DSSP) TT


S


S


SSS



S
 .........220.........230.........240.........250.........260.........270.........280
Sequence DIEELKQVNLEISRSEAKITQAKKEMIEANLRLVVSEAKKYTNRGLHFLDIIQEGNIGLMKAVDKFDYRK
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Known secondary structure (DSSP)
TTTT
SSSSS


SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence GFKFSTYATWWIRQAITRSIADQARTIRVPVHMIETINKVNRIKRQILQEKGREATEEEIIEHTPNMSKE
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Known secondary structure (DSSP)


SSSSS




S

T
SS

S
 .........360.........370.........380.........390.........400.........410.........420
Sequence KLKKILNISHTPISMESPIGDDEDSTVGDFIEDKNNYSPIEAANLENLREAIKELIETGLTEREAKVLMM
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Known secondary structure (DSSP) TTS





TT
B
SSGGG
B



SS

SSSS
 .........430.........440.........450.........460.........470
Sequence RFGIGMNTDHTLEEVGKQFNVTRERIRQIEAKALRKLKHPSRSAFLKTFL
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Known secondary structure (DSSP) TSS
SS


TS
TTTSTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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