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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6wmtD_

Fold library idPDB HeaderMoleculeTitle
c6wmtD_4.43PDB header: transcriptionChain: D: PDB Molecule: dna-directed rna polymerase subunit beta';


Added to library: Sat Nov 14 09:05:04 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SKKFDIIKISLASPEVIRSWSHGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKHRGV
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S


B
SSS

B
SSSTT


SSTT

SS
S

STT
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence VCERCGVEVEQAKVRRERMGHIDLVCPVVHIWYLKSLPSRIGLFLDMPLKNVEKVLYFESYIVTDPGMTP
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Known secondary structure (DSSP) B
SSSS
BSS
TT

TSSS
TS
TSS
SB

SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence LEKKQLLTDEEYAEALENYGYEFEASMGAEAIRDLLADTDIESEIELLQAECEESKSTAKKEKAIKRLRL
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Known secondary structure (DSSP) S
SS


SS
B


SS

S

TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LETFQASGNKPEWMVMTVLPVLPPDLRPLVPIEGGRFATSDLNDLYRRVINRNNRLKKLLDLNAPDIIVR
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Known secondary structure (DSSP)


GGGG

GGGS


TTT


T

 .........290.........300.........310.........320.........330.........340.........350
Sequence NEKRMLQEAVDALLDNGRRGRAVTGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPSLRL
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Known secondary structure (DSSP) STTSSS


B
TT

B


SSTTSTTTT


SS

TTS
T
 .........360.........370.........380.........390.........400.........410.........420
Sequence HECGLPKKMALELFKPFVYSKLRLGGHATTIKQAKRMVELEEAVVWDILETVINEHPVLLNRAPTLHRLG
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Known secondary structure (DSSP) TTTS
SSTT
TTT


S


SGGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence IQAFEPRLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLTVESQLEARVLMMSTNNILSPASGQPIITPT
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Known secondary structure (DSSP) SSSS


T

TTT



SBTTT

B
SS
SSBS
S

 .........500.........510.........520.........530.........540.........550.........560
Sequence QDIVLGLYYITREKEGARGEGKLFSSYEDVSRAYNSGTIDIHAKIKLRIDRQVFDTKGNTYNEKGVVNTT
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Known secondary structure (DSSP) S


SS
TTTT
SST
S
TTS


TTS

S
 .........570.........580.........590.........600.........610.........620.........630
Sequence VGRALLLNILPEGLSFSLLNKVLVKKEISKIINQAFRVLGGKATVVLADKLMYAGFKYSTLSGVSVGVDD
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Known secondary structure (DSSP) TTS
TBS
TTTTSS


T
T



GGG
 .........640.........650.........660.........670.........680.........690.........700
Sequence MTIPDNKEAKIEEAEKEIKQITEQYQSSLITENERYNNIINIWSKTSDEVGASMMDAISKDTVSINGEKK
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Known secondary structure (DSSP) S


TTT
S


TTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence EIESFNSVYMMAKSGARGSYNQMRQLAGMRGLMAKPDGTMIETAITANFREGLSVLQYFTSTHGARKGLA
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Known secondary structure (DSSP)



SS

S

B

B
SS

B
SS
B

BTTTB

 .........780.........790.........800.........810.........820.........830.........840
Sequence DTALKTANAGYLTRRLVDVAQDLVVIEEDCGTDDGLMFSAIVEDGEVKVPLVERALGRTLAADVVTEKGV
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Known secondary structure (DSSP) TT

S










SS


S
TT
SS

TTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence VLLEAGTLLDENLVELLDDNGIDMIKVRSPITCKTRRGLCAKCYGRDLARERQVNVGESVGVIAAQSIGE
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Known secondary structure (DSSP)
SS

T



TTT

STTS
B
SSSSSB

TT

 .........920.........930.........940.........950.........960.........970.........980
Sequence PGTQLTMGLPRVAELFEARRPKDAAILSPCDGMVRLGNRDTKEKQRIEIIDKNGHIVEEILLPKSRHLVV
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Known secondary structure (DSSP)



T


TT


SS

B



S
SSS
B



S
SSSS






B
SSS

SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence FDGEQVSRGDVLADGPTDPHDLLKYKGLEEFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKAVILD
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Known secondary structure (DSSP)
SS
B

TT
S
S


TTT





 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence EGDSKFVKDESIELVRILEENDKLRKQGKKEVEYELVLMGITRSSLSTESFLSAASFQETTRVLTEASIN
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Known secondary structure (DSSP) SSS
SSSSSS
TT




T
S
S
 .........1130.........1140.........1150.........
Sequence SQIDNLRGLKENVLIGRLIPAGTGLAVRKESAKIEKMRE
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Known secondary structure (DSSP) T



ST


SST


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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