PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6wmtA_

Fold library id	PDB Header	Molecule	Title
c6wmtA_	4.43	PDB header: transcription	Chain: A: PDB Molecule: dna-directed rna polymerase subunit alpha 1;

Links to external resources
Added to library: Sat Nov 14 08:46:53 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L E F V P N I Q L K E D L G A F S Y K V Q L S P V E K G M A H I L G N S I R R V L L S S L S G A S I I K V N I A N V L H E Y S T L E D V K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
S S S
T T
S S S S
T T B S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D V V E I V S N L K K V A I K L D T G I D R L D L E L S V N K S G V V S A G D F K T T Q G V E I I N K D Q P I A T L T N Q R A F S L T A T V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S S B
G G G S
S S
S
S S S
S
B B S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S V G R N V G I L S A I P T E L E R V G D I A V D A D F N P I K R V A F E V F D N G D S E T L E V F V K T N G T I E P L A A V T K A L E Y F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
S T T
S S S
S S S

. . . . . . . . . 220 . . .

Sequence C E Q I S V F V S L R V P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	E	F	V	P	N	I	Q	L	K	E	D	L	G	A	F	S	Y	K	V	Q	L	S	P	V	E	K	G	M	A	H	I	L	G	N	S	I	R	R	V	L	L	S	S	L	S	G	A	S	I	I	K	V	N	I	A	N	V	L	H	E	Y	S	T	L	E	D	V	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	T							S				S	S	S																											T	T		S	S	S	S				T	T	B	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	V	V	E	I	V	S	N	L	K	K	V	A	I	K	L	D	T	G	I	D	R	L	D	L	E	L	S	V	N	K	S	G	V	V	S	A	G	D	F	K	T	T	Q	G	V	E	I	I	N	K	D	Q	P	I	A	T	L	T	N	Q	R	A	F	S	L	T	A	T	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T	T												S	S	B			G	G	G	S				S	S				S		S	S	S		S		B	B	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	V	G	R	N	V	G	I	L	S	A	I	P	T	E	L	E	R	V	G	D	I	A	V	D	A	D	F	N	P	I	K	R	V	A	F	E	V	F	D	N	G	D	S	E	T	L	E	V	F	V	K	T	N	G	T	I	E	P	L	A	A	V	T	K	A	L	E	Y	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	T	T								S	T	T																						S	S	S											S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	C	E	Q	I	S	V	F	V	S	L	R	V	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	S