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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6wmpC_

Fold library idPDB HeaderMoleculeTitle
c6wmpC_2.98PDB header: transcriptionChain: C: PDB Molecule: dna-directed rna polymerase subunit beta;


Added to library: Sat Nov 14 08:58:42 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MSYSYAEKKRIRKEFGVLPHILDVPYLLSIQTESYKKFLTVDAAKGRLHSGLEIVLKQSFPVESKNGQYE
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Known secondary structure (DSSP)


SSGGGTS













TTTTTTTT

BTTTTB
S
TTTT




SSSS

 .........80.........90.........100.........110.........120.........130.........140
Sequence LHYVDYQIGEPTFDETECQVRGATYDAPLNVKLRLVVYNKDALPNEKIVEDIREEYVYMGDIPLMTTNGT
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Known secondary structure (DSSP)



SS
T









SSS
TTSSS





SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence FIINGTERVVVSQLHRSPGAFFSKDDSEEGAFSARIIPYRGSWLDFEFDSKGIIWARIDRKRKFCATVIL
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Known secondary structure (DSSP) SSS


S



TTSSS


SBS



TT



TT


G
 .........220.........230.........240.........250.........260.........270.........280
Sequence KALGYTQEQILENRGRYISDTLKYDLTRNTDEALVEIYKVLRPGDPPAAASVKALFEGLFFIESRYSLSD
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Known secondary structure (DSSP) GGT

TTT


STTTT



SSTT



SSSTTSS
TTT
B
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence IGRMKLNARLGSDKVSKDIYTLENSDIVGVIEELINIRDGKGKVDDIDHLGNRRVRSVGEMVENQFRIGL
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Known secondary structure (DSSP) TS



S
SS

S

TTTSS



TT
TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence YRVEKGIRESMSLVHKDKLMPKDIVNSKPITAAIKEFFTSGALSQFMDQDNPLSEVTHKRRISALGPGGL
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Known secondary structure (DSSP) TTS


SS

TTSS



SS


SSTT
S
STTS
 .........430.........440.........450.........460.........470.........480.........490
Sequence SRDRAGFEVRDVHATHYGRLCPIETPEGPNIGLINSLASYARVNDYGFLEAPYRKVVDGKVTDEIEYLSA
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Known secondary structure (DSSP)
TTT

SSSSS

GGGTTTB
SS


SSTTTTSS

B
SS

TTS
TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence IDEDNYVIAQASTKLDENNHFVEDIIQCRSGGEAIFTESSRVQYMDVSAKQMVSAAAALIPFLEHDDANR
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Known secondary structure (DSSP) TTGGG

B

TT

B
SSS
BS
SSSSSGGG

B
BS
SSSSS
SSSTTSSS
TTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence VLMGANMQRQAVPTLKSEKPLVGTGMEKIVARDSGNCIIARNVGEVAEVDSNRIVIKVDTEKSQTSNLVD
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Known secondary structure (DSSP) TTSB


SS



S
S
TTTSS

S

SS


TTTS
S

S
 .........640.........650.........660.........670.........680.........690.........700
Sequence IYSLTKFKRSNKNTCINQRPIVNVGDKVEAGDILADGFATDFGELSLGHNLMVAFMPWNGYNFEDSILLS
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Known secondary structure (DSSP)


S
TTS





TT

TT

TTBSSSSB

S

S

SSSSSSS

 .........710.........720.........730.........740.........750.........760.........770
Sequence ERIVKDDKYTSIHIEEFTCVARDTKLGPEEITADIPNVSESSLAKLDESGIVHIGANVEAGDILVAKITP
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Known secondary structure (DSSP) STTTT


TTS

B

S

TT

SGGGSSB
SSSBB
TT

TT
BSB

 .........780.........790.........800.........810.........820.........830.........840
Sequence KAEQQLTPEERLLRAIFNEKASNVVDSSLRMPSGTSGTVINVQVFENDKGGKSKRALKIEKELIDKARKD
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Known secondary structure (DSSP)






STTTT



S


B

SS



SS



TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence FDEEFAVIESVVKSSIEQEVVGEKVQNAREYYEEAKIAIDAKFEAKKKSITQSNELSPGVLKTVKVFVAI
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Known secondary structure (DSSP) TTTTT

TTSSSSSSTT
SSSSSS


TT
 .........920.........930.........940.........950.........960.........970.........980
Sequence KKRIQPGDKMAGRHGNKGVVSRVLPVEDMPYMEDGTPVDVCLNPLGIPSRMNIGQILEAHLGLASYGLGK
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Known secondary structure (DSSP)


TT
TTS


TTSS
B
TTS
B
S

STTT

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence KIEKTLEKTRKAAELRKTLEEVYNSVGDKKVNLEALNDEEILTLCDNLKGGVPIATPVFDGAKEEDIKSL
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Known secondary structure (DSSP) TS


STTSSSSS



GGGS
TTS




SSS


 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LKIGGFATNGQMKLFDGRTGKPFDRHVTVGYMYMLKLDHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQ
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Known secondary structure (DSSP) T

SSS

B
TTT

B
SS


BS

GGGS



SS

B
SSS

B

SSSS



 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence RFGEMEVWALQAYGAAYTLREMLTVKSDDIAGRSKMYKNIVDGKLTMNVDVPESFNVLRNEVRALGIDMD
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Known secondary structure (DSSP)


ST
TTTTTTT
T








TTTT



 ......
Sequence FDYSSE
Predicted secondary structure


SS confidence





Known secondary structure (DSSP)






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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