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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6w2dO_

Fold library idPDB HeaderMoleculeTitle
c6w2dO_4.00PDB header: viral proteinChain: O: PDB Molecule: major capsid protein;


Added to library: Sat Jul 18 08:38:40 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AAEGLFHSFDLLVGKDAREAGIKFEVLLGVYTNAIQYVRFLETALAVSCVNTEFKDLSRMTDGKIQFRIS
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Known secondary structure (DSSP)


SS
SSS

STTS












STTSGGGGTS
TTT



 .........80.........90.........100.........110.........120.........130.........140
Sequence VPTIAHGDGRRPSKQRTFIVVKNCHKHHISTEMELSMLDLEILHSIPETPVEYAEYVGAVKTVASALQFG
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Known secondary structure (DSSP)





SS






S


S
 .........150.........160.........170.........180.........190.........200.........210
Sequence VDALERGLINTVLSVKLRHAPPMFILQTLADPTFTERGFSKTVKSDLIAMFKRHLLEHSFFLDRAENMGS
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Known secondary structure (DSSP) T

BS
TTTSTT
S
SSSTTSS
S
 .........220.........230.........240.........250.........260.........270.........280
Sequence GFSQYVRSRLSEMVAAVSGESVLKGVSTYTTAKGGEPVGGVFIVTDNVLRQLLTFLGEEADNQIMGPSSY
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Known secondary structure (DSSP)




TTTTTS


SS

S





TT
SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence ASFVVRGENLVTAVSYGRVMRTFEHFMARIVDSPEKAGSTKSDLPAVAAGVEDQPRVPISAAVIKLGNHA
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Known secondary structure (DSSP)


TS


TTTT
S




SSSTTTS

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VAVESLQKMYNDTQSPYPLNRRMQYSYYFPVGLFMPNPKYTTSAAIKMLDNPTQQLPVEAWIVNKNNLLL
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Known secondary structure (DSSP)

TT


TT

S



SS


S
SS


SS
STT





TT

 .........430.........440.........450.........460.........470.........480.........490
Sequence AFNLQNALKVLCHPRLHTPAHTLNSLNAAPAPRDRRETYSLQHRRPNHMNVLVIVDEFYDNKYAAPVTDI
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Known secondary structure (DSSP)
SS

TSSS






SSSS



SS

SSS






S
 .........500.........510.........520.........530.........540.........550.........560
Sequence ALKCGLPTEDFLHPSNYDLLRLELHPLYDIYIGRDAGERARHRAVHRLMVGNLPTPLAPAAFQEARGQQF
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Known secondary structure (DSSP) TTS
SSTT

TTGGG


SS



SSS





SSTTS
TTTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence ETATSLAHVVDQAVIETVQDTAYDTAYPAFFYVVEAMIHGFEEKFVMNVPLVSLCINTYWERSGRLAFVN
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Known secondary structure (DSSP) T





T
TT

TTT
TSS




S
 .........640.........650.........660.........670.........680.........690.........700
Sequence SFSMIKFICRHLGNNAISKEAYSMYRKIYGELIALEQALMRLAGSDVVGDESVGQYVCALLDPNLLPPVA
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Known secondary structure (DSSP)
T
S

S

S
BSSSSBTBSTT
TT


S
 .........710.........720.........730.........740.........750.........760.........770
Sequence YTDIFTHLLTVSDRAPQIIIGNEVYADTLAAPQFIERVGNMDEMAAQFVALYGYRVNGDHDHDFRLHLGP
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Known secondary structure (DSSP)
B
T
SS

TTB



GGG


TTTTSSS

GGG


B
 .........780.........790.........800.........810.........820.........830.........840
Sequence YVDEGHADVLEKIFYYVFLPTCTNAHMCGLGVDFQHVAQTLAYNGPAFSHHFTRDEDILDNLENGTLRDL
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Known secondary structure (DSSP)

SSS

TTTTS


TTSTTT
TTS
SSSBSGGG

TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence LEISDLRPTVGMIRDLSASFMTCPTFTRAVRVSVDNDVTQQLAPNPADKRTEQTVLVNGLVAFAFSERTR
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Known secondary structure (DSSP) T


BGGGGS


S


GGG


S
TTTTS




 .........920.........930.........940.........950.........960.........970.........980
Sequence AVTQCLFHAIPFHMFYGDPRVAATMHQDVATFVMRNPQQRAVEAFNRPEQLFAEYREWHRSPMGKYAAEC
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Known secondary structure (DSSP) TTT



STTT



GGGGSTTT



TTT

SSSSSS
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LPSLVSISGMTAMHIKMSPMAYIAQAKLKIHPGVAMTVVRTDEILSENILFSSRASTSMFIGTPNVSRRE
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Known secondary structure (DSSP)
SS
B

ST


SSTT



 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence ARVDAVTFEVHHEMASIDTGLSYSSTMTPARVAAITTDMGIHTQDFFSVFPAEAFGNQQVNDYIKAKVGA
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Known secondary structure (DSSP)
SS
SSS



SB
S

B

STTT

S


S
TT
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence GAPGLCHGQQATCEIIVTPVTADVAYFQKSNSPRGRAACVVSCENYNQEVAEGLIYDHSRPDAAYEYRST
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Known secondary structure (DSSP)

S

SS
SB

B
TT

S
B
TTSS


TTSS
TT
S

SS

SS
SS
S
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence VNPWASQLGSLGDIMYNSSYRQTAVPGLYSPCRAFFNKEELLRNNRGLYNMVNEYSQRLGGHPATSNTEV
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Known secondary structure (DSSP) S
STTS
TTTS

S
TTB

TT
TTS



S

B
SS
SS
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence QFVVIAGTDVFLEQPCSFLQEAFPALSASSRALIDEFMSVKQTHAPIHYGHYIIEEVAPVRRILKFGNKV
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Known secondary structure (DSSP)
BB
SS
SS


T
B

SS
SSS

SB
SS
B



SS


TT
 ..
Sequence VF
Predicted secondary structure
SS confidence

Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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