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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6w1sK_

Fold library idPDB HeaderMoleculeTitle
c6w1sK_4.02PDB header: gene regulationChain: K: PDB Molecule: mediator of rna polymerase ii transcription subunit 16;


Added to library: Sat Mar 13 09:11:47 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LAYVCEWEKWAKSTYCPSLPLACAWSCRNLIAFTTDLRTHMIHILDTEHPWEVHSVSSGHSEAITCLEWD
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Known secondary structure (DSSP)

SB


SS



TTS








SSS














SSS

S


SSSS






S
 .........80.........90.........100.........110.........120.........130.........140
Sequence QSGSRLLSADADGQIKCWSMADHLANSWESSVGSQVEGDPIVALSWLHNGVKLALHVEKSGASSFGEKFS
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Known secondary structure (DSSP) SS





SSS
S





SS
SS




S




TT

B






S




TTTTTTS
TTTTSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence RVKFSPSLTLFGKPMEGWIAVTVSGLVTVSLLKPSGQVLTSTESLCRLRGRVALADIAFTGGGNIVVAAA
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Known secondary structure (DSSP)




TT
B

B







BSSSS







SS








TTS









B
SSS
B




 .........220.........230.........240.........250.........260.........270.........280
Sequence DGSSASPVKFYKVCVSVVSEKCRIDTEILPSLFMRCTTDPNRKDRFPAITHLKFLARDMSEQVLLCATSS
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Known secondary structure (DSSP) S
GGG




B




SS












SS





S

B

S
TTT
BB
B






 .........290.........300.........310.........320.........330.........340.........350
Sequence LVECWSLRKEGLPVNNIFQQQPMILKWRILSATNDLDRVSAVALPTNTDLKVASDTQFYPGLGLALAFQD
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SS









S




S





TT



S

SSSS
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence GSVHMVHRLSLQTMAVFYSKAMQLSWTSLALVGIDNHGKLSMLRISPSLGHPLEPKLALQHLLFLLEYCM
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Known secondary structure (DSSP) S

TTT













SSSS






SSSS






SS

SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence VTGYDWWDILLHVQPGMVQSLVERLHEEYTRQKPALQQVLSTRILAMKASLCKLSRVCDYHTKLFLMAIT
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Known secondary structure (DSSP)




GGGTS
SGGGTT
SS



 .........500.........510.........520.........530.........540.........550.........560
Sequence STLKSLLRPHFLNTPDKSPGDRLAEICAKITDVDIDKVMINLKTEEFVLDMNTLQALQQLLQWVGDFVLY
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Known secondary structure (DSSP) STT





SS
GGGTTSS
SS

SSS



S

TTTTTTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence LLVSLPNQGSPLRPGHSFLRDGTSLGMLRELMVVIRIWGLLKPSCLPVYTATSDDSMSLLFRLLTKLWIC
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Known secondary structure (DSSP) TSTTTTSSSSSTT



SSSS




SSS



T
 .........640.........650.........660.........670.........680.........690.........700
Sequence CRDEGAASPASDGLVSRLQPKQPLRLRFGRAPTLPSSTSTLQLDGLTRAPGLHLGAYPTEECKACTRCGC
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Known secondary structure (DSSP) TSSS







TT















SS

B

SSS





SS


SS

S


SS
 .........710.........720.........730.....
Sequence VTMLKSPNKTTAVTQWEQRWIKNCLCGGLWRRVPL
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Known secondary structure (DSSP) S

B
SS
S
SS
S

TTT






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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