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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6w1sI_

Fold library idPDB HeaderMoleculeTitle
c6w1sI_4.02PDB header: gene regulationChain: I: PDB Molecule: mediator of rna polymerase ii transcription subunit 14;


Added to library: Sat Mar 13 08:32:59 2021
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LVHARLPSFAIPYAIDVLYPRLPTCIRDKIIPPDPITKIEKQATLHQLNQILRHRLVTTDLPPQLANLTV
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Known secondary structure (DSSP)


SS


STT

SS



SS




TTS

TTTTT



 .........80.........90.........100.........110.........120.........130.........140
Sequence ANGRVKFRVEGEFEATLTVMEVPWRLLKLEILVRALVHSMQIDFIHQLVQSRLFADEKPLQDMYNCLHCF
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Known secondary structure (DSSP)
SSS


TTTS
B








B




S


S

TTTT
SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence CLSLQLEVLHSQTLMLIRERWGDLVQVERYHAGKSLSLSVWNQSVHKVTIKIDENDVSKPLQIFHDPPLR
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Known secondary structure (DSSP) TT
SSSS



SSS







TTS
SSSS

SS


 .........220.........230.........240.........250.........260.........270.........280
Sequence AMKIDHLSIEKLLIDSVHARAHQRLQELKAILRSFNASIETALPALIVPILEPECLHIFVDLHSGMFQLM
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Known secondary structure (DSSP)




SS





SS


SS







TTSS


 .........290.........300.........310.........320.........330.........340.........350
Sequence LYGLDPATLEDMEKSLNDDMKRIIPWIQQLKFWLGQQRCKQSIKHLPTITTETLQLANYSTHPIGSLSKN
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Known secondary structure (DSSP)
SSS
TTTSSTTSSSS

S

S

TTTTS



S

 .........360.........370.........380.........390.........400.........410.........420
Sequence KLFIKLTRLPQYYIVVEMLEVPNKPTQLSYNYYFMSVSSPVMALLLQQFKDNIQDLMSYTKTGCAFNKVL
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Known secondary structure (DSSP)

SSS
SSSS


SS
TT
SS
















TT


TTTS




 .........430.........440.........450.........460.........470.........480.........490
Sequence AHFVAMCDTNMPFVGLRLELSNLEIPHQGVQVEGDGFNHAIRLLKIPPCKGISEETQKALDRSLLDCTFR
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Known secondary structure (DSSP) TTTS

BTT

STTTS
S


S



SS
TTT


 .........500.........510.........520.........530.........540.........550.........560
Sequence LQGRNNRTWVAELVFANCPLNGTSTREQGPSRHVYLTYENLLSKVVEMFLNDWSSIARLYECVLEFARSL
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Known secondary structure (DSSP)
SSSSS


SS
SS

TTS


SS




S






 .........570.........580.........590.........600.........610.........620.........630
Sequence PEIPAHIFSEVRVYNYRKLILCYGTTKGSSISIQWNSIHQKFHIALGTVGPNSGCSNCHNTILHQLQEMF
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Known secondary structure (DSSP) SSGGG





S

SSS

TTSS

S

SSSS







SSS
SS
S

SS
 .........640.........650.........660.........670.........680.........690.........700
Sequence NKTPNVVQLLQVLFDTQAPLNAINKLPTVPMLGLTQRTNTAYQCFSILPQSSTHIRLAFRNMYCIDIYCR
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Known secondary structure (DSSP)


TTS

S


SS
SSSSS


SS

B

SSS

BB
SSSSS

 .........710.........720.........730.........740.........750.........760.........770
Sequence SRGVVAIRDGAYSLFDNSKLVEGFYPAPGLKTFLNMFVDSRSWAASIPTIHSALNILLLPSPTPGLVPGL
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Known secondary structure (DSSP) SSS
SSSTTSSSS


SSS
S

S
TT









SS
BS

TT



 .........780.........790.........800.........810.........820.........830.........840
Sequence AGSYLCSPLERFLGSVIMRRHLQRIIQQETLQLINSNEPGVIMFKTDALKCRVALSPKTNQTLQLKVTPE
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Known secondary structure (DSSP) S



B
TS





SS





SS






SSTTT







SS

 .........850.........860.........870.........880.........890.........900.........910
Sequence DELQVLEKFFETRVAGPPFKANTLIAFTKLLGAPTHILRDCVHIMKLELFPDQLKWNVQFCLTIPPSAPP
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Known secondary structure (DSSP)
SS
S
S



TTTSS




S






SS
TTS

 .........920.........930.........940.........950.........960.........970.........980
Sequence IAPPGTPAVVLKSKMLFFLQLTQKTVSIIVPIIYDMATQQANSSVAAPMMVSNILKRFAEMRQGECTIFA
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Known secondary structure (DSSP) S


SS
S


SSS
B


B








B

BB



B



TT



SSSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence AVRDLMANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) T



S
SS


 .........1060.........1070.......
Sequence XXXXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) TTS

TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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