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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6vrcA_

Fold library idPDB HeaderMoleculeTitle
c6vrcA_3.20PDB header: immune systemChain: A: PDB Molecule: crispr-associated endoribonuclease cas13a;


Added to library: Sat Jun 13 08:21:35 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TMRITKVEVDRKKVLISRDKNGGKLVYENEMQDNTEQIMHHKKSSFYKSVVNKTICRPEQKQMKKLVHGL
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Known secondary structure (DSSP)


SSSS
SSSS



BSS



SS




TTTTSS
SS

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence LQENSQEKIKVSDVTKLNISNFLNHRFKKSLYYFPENSPDKSEEYRIEINLSQLLEDSLKKQQGTFICWE
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Known secondary structure (DSSP)
TTT



BSSSSS
S
GGGTS
SSSSS


TT
SS

TTTS
SS

SSB

 .........150.........160.........170.........180.........190.........200.........210
Sequence SFSKDMELYINWAENYISSKTKLIKKSIRNNRIQSTESRSGQLMDRYMKDILNKNKPFDIQSVSEKYQLE
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Known secondary structure (DSSP) TT

TT

SSTTTTT




TTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KLTSALKATFKEAKKNDKEINYKLKSTLQNHERQIIEELKENSELNQFNIEIRKHLETYFPIKKTNRKVG
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Known secondary structure (DSSP) TSSSSS

SSTTTTSSS
SSS
SSS


S

 .........290.........300.........310.........320.........330.........340.........350
Sequence DIRNLEIGEIQKIVNHRLKNKIVQRILQEGKLASYEIESTVNSNSLQKIKIEEAFALKFINACLFASNNL
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Known secondary structure (DSSP)
STTTSTTTSTT
TTS
B
 .........360.........370.........380.........390.........400.........410.........420
Sequence RNMVYPVSFKEIKHKKFIRQWSQFFSQEITVDDIELASWGLRGAIAPIHLKKHSWKKFFNNPTFKVKKTS
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Known secondary structure (DSSP)




S


SSS


STTTTTS




S



TTSS








 .........430.........440.........450.........460.........470.........480.........490
Sequence EFLYKETLFKDYFYSELDSVPELIINKMESSKILDYYSSDQLNQVFTIPNFELSLLTSAVPFAPSFKRVY
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Known secondary structure (DSSP)
STTSTTSSSSTTTS
GGGTTTTS

TT



S


SSSS


 .........500.........510.........520.........530.........540.........550.........560
Sequence LKGFDYQNQDEAQPDYNLKLNIYNEKAFNSEAFQAQYSLFKMVYYQVFLPQFTTNNDLFKSSVDFILTLN
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Known secondary structure (DSSP) S

SSSS






S




TTSSSTTTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence KERKGYAKAFQDIRKMNKDEKPSEYMSYIQSQLMLYQKKQEEKEKINHFEKFINQVFIKGFNSFIEKNRL
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Known secondary structure (DSSP) SSSSSS

SS
SS



TT

TTTTT


TTSST
 .........640.........650.........660.........670.........680.........690.........700
Sequence TYICHPTKNTVPENDNIEIPFHTDMDDSNIAFWLMCKLLDAKQLSELRNEMIKFSCSLQSTEEISTFTKA
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Known secondary structure (DSSP) TGGG




SS














TT
TTTSS
STT


SSS
 .........710.........720.........730.........740.........750.........760.........770
Sequence REVIGLALLNGEKGCNDWKELFDDKEAWKKNMSLYVSEELLQSLPYTQEDGQTPVINRSIDLVKKYGTET
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Known secondary structure (DSSP) TTSS



SSTTT
SSTTTT
SSTTSSTTTBSSSTT
B


STT
 .........780.........790.........800.........810.........820.........830.........840
Sequence ILEKLFSSSDDYKVSAKDIAKLHEYDVTEKIAQQESLHKQWIEKPGLARDSAWTKKYQNVINDISNYQWA
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Known secondary structure (DSSP) TTT
SSSS

TTSS
S
GGGGS
TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence KTKVELTQVRHLHQLTIDLLSRLAGYMSIADRDFQFSSNYILERLRLTLEYLELFDNRLKEKRNNISHFN
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Known secondary structure (DSSP) TT
TT

TTTT


SSTTG
 .........920.........930.........940.........950.........960.........970.........980
Sequence YLNGQLGNSILELFDDARDVLSYDRKLKNAVSKSLKEILSSHGMEVTFKPLYQTNHHLKIDKLQPKKIHH
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Known secondary structure (DSSP) GGSSS
SS
STTTGGG
TTTTTTB





TTTTTS



S


B
B


 .........990.........1000.......
Sequence LGEKSTVSSNQVSNEYCQLVRTLLTMK
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Known secondary structure (DSSP) SSSSSS


BSS
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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