PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6vj4A_

Fold library id	PDB Header	Molecule	Title
c6vj4A_	1.70	PDB header: isomerase	Chain: A: PDB Molecule: peptidylprolyl isomerase prsa;

Links to external resources
Added to library: Sat Feb 8 08:25:44 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D X L Y E X I A Q D V I T K K Y K V S D D D V D K E V Q K A K S Q Y G D Q F K N V L K N N G L K D E A D F K N Q I K F K L S X N K A I K Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G T T
S S T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V T E K D V K D H Y K P E I K A S H I L V S D E N E A K E I K K K L D T G A S F E E L A K Q E S Q D L L S K E K G G D L G Y F H S G A X T P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
T T
T T T T
T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E F E T A A Y K L K I G Q I S D P V Q S P N G Y H I I K L T G K K D L K P Y D E V K N S I R K N L E E E R T A D P I F G K K L L Q S E L K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
B
S
T T
S

. . . . . . .

Sequence A N I K I N D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	X	L	Y	E	X	I	A	Q	D	V	I	T	K	K	Y	K	V	S	D	D	D	V	D	K	E	V	Q	K	A	K	S	Q	Y	G	D	Q	F	K	N	V	L	K	N	N	G	L	K	D	E	A	D	F	K	N	Q	I	K	F	K	L	S	X	N	K	A	I	K	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																S																			G	G	G								T	T		S	S																					T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	T	E	K	D	V	K	D	H	Y	K	P	E	I	K	A	S	H	I	L	V	S	D	E	N	E	A	K	E	I	K	K	K	L	D	T	G	A	S	F	E	E	L	A	K	Q	E	S	Q	D	L	L	S	K	E	K	G	G	D	L	G	Y	F	H	S	G	A	X	T	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T													S														T	T																		T	T	T	T							T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	F	E	T	A	A	Y	K	L	K	I	G	Q	I	S	D	P	V	Q	S	P	N	G	Y	H	I	I	K	L	T	G	K	K	D	L	K	P	Y	D	E	V	K	N	S	I	R	K	N	L	E	E	E	R	T	A	D	P	I	F	G	K	K	L	L	Q	S	E	L	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S		T	T		B		S					T	T																																	S
	.	.	.	.	.	.	.
Sequence	A	N	I	K	I	N	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T