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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6vg1B_

Fold library idPDB HeaderMoleculeTitle
c6vg1B_2.00PDB header: cell adhesionChain: B: PDB Molecule: protocadherin protein;


Added to library: Sat Mar 14 09:05:01 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KTVRYRTYEEDEPGTVIGTLAEDLHLEGEGSFRLMKQFNNSLIHVRESDGQLSIGERIDRERICRQSPHC
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Known secondary structure (DSSP)
TT

TT
TT

S



S

SS

STTTT
S


TTT
S

 .........80.........90.........100.........110.........120.........130.........140
Sequence TLALDVVSVAKEQFKLIHVEVEVRDINDNSPRFPGAEIPVEVSESAPVGTRIPLDIATDEDVGVNSIQSF
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Known secondary structure (DSSP) TT

S
S

B
SSSTT

TT




B
SS
GGGS
 .........150.........160.........170.........180.........190.........200.........210
Sequence QISENSHFSIDVQTRADGVKYADLVLMKELDRESQSAYTLELLAMDGGSPSRSGTTMVNVRVLDFNDNSP
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Known secondary structure (DSSP)




SSB


TT

B
S


TTT

SSSS








 .........220.........230.........240.........250.........260.........270.........280
Sequence VFERSSVMVELMEDAPVGHLLLDLDALDPDEGANGEIVYGFSPQVPQEVRQLFKIDAKSGRLTLEGQVDF
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Known secondary structure (DSSP) SSSTT

TT




S
GGGG

TT


TTT

S


T
 .........290.........300.........310.........320.........330.........340.........350
Sequence ETKQTYEFDAQAQDMALNPLTATCKVIVRVIDVNDNAPVIGITPLTSISAGVAYITEAAARESFVALIST
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Known secondary structure (DSSP) TT


SSS



S



SSBSSTTTT

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence TDRDSGQNGQVHCTLYGHEHFRLQQAYEDSYMIVTTSALDREKIAEYNLTVVAEDLGSPPFKTVKQYTIR
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Known secondary structure (DSSP)
SS
GGGG
S
TTTT
S


TTT



SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence VSDENDNAPVFAKPVYEVSVLENNAPGAYITTVVARDPDFGHNGKVIYRLVETEVMGAPITTYVSLDPAT
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Known secondary structure (DSSP)






SSSSS

TT



S
GGGG



TTGGGT
TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence GAVYALRTFNHEILQQLDLRIQASDGGSPQLTSSAIIKVKIVDQNDNAPVIVQPALSNGSAEVVVPSRAP
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Known secondary structure (DSSP)

S


TTT

S
SS



S



S

BTT
S


 .........570.........580.........590.........600.........610.........620.........630
Sequence HGFLVTHIKAKDADEGVNAELTYSIADEGRNVFTINKATGEVFLVADVSEAIGQVFRATVSVSDSGRPPL
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Known secondary structure (DSSP) SS




SS
GGGG




SS

TTTT
S




S







SSSS

 .........640.
Sequence SSTATITFLVT
Predicted secondary structure
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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