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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6vejC_

Fold library idPDB HeaderMoleculeTitle
c6vejC_4.50PDB header: transport proteinChain: C: PDB Molecule: probable resistance-nodulation-cell division (rnd) efflux


Added to library: Sat Oct 3 09:35:26 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MAKGGFNLSDWALRHQSLVWYLMAVSLVMGVFSYLNLGREEDPSFAIKTMVIQTRWPGATVDDTLEQVTD
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Known secondary structure (DSSP)

SS

TSSTS
B
SS







SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence RIEKKLEELDSLDYVKSYTRPGESTVFVYLKDTTKAGDIPDIWYQVRKKISDIQGEFPQGIQGPGFNDEF
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Known secondary structure (DSSP) T
TT
SS
TTS
SS
GGGS
S


SS

 .........150.........160.........170.........180.........190.........200.........210
Sequence GDVFGSVYAFTADGLDFRQLRDYVEKVRLDIRSVKDLGKVQMIGAQNEVIYLNFSTRKLAALGLDQRQVV
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Known secondary structure (DSSP) TT





SS
TTSS




S



TT

 .........220.........230.........240.........250.........260.........270.........280
Sequence QSLQAQNAVTPSGVVEAGPERISVRTSGNFRSEKDLQAVNLRVNDRFYRLSDLASISRDFVDPPTSLFRY
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Known secondary structure (DSSP) TS
S


SSS




S

SST



TTTT






S
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence KGEPAIGLAVAMKEGGNILEFGEALNARMQEITGELPVGVGVHQVSNQAQVVKKAVGGFTRALFEAVVIV
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Known secondary structure (DSSP) TT




TT

TTTT

SS


 .........360.........370.........380.........390.........400.........410.........420
Sequence LIVSFVSLGLRAGLVVACSIPLVLAMVFVFMEYTDITMQRVSLGALIIALGLLVDDAMITVEMMITRLEL
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Known secondary structure (DSSP)
SSST

B
 .........430.........440.........450.........460.........470.........480.........490
Sequence GDSLHDSATYAYTSTAFPMLTGTLVTVAGFVPIGLNASSAGEYTFTLFAVIAVALLLSWIVAVLFAPVIA
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Known secondary structure (DSSP) S

SSGGGG


STT
 .........500.........510.........520.........530.........540.........550.........560
Sequence VHILPKTLKHKSEQKKGRIAERFDSLLHLAMRRRWTTIFLTALLFGVSLFLMKFVQHQFFPSSDRPELLV
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GGG
TTT

S

B


S
 .........570.........580.........590.........600.........610.........620.........630
Sequence DLNLPQNSSIHETRAVMDRLEATLKDDEDIDHWSAYVGEGAIRFYLPLDQQLQNNFYGQLVIVTKDLEAR
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Known secondary structure (DSSP)
SS


SSS
TT
S



SSSSS



S
GGG

SS
TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence ERVAARLRDRLRKDYVGISTYVQPLEMGPPVGRPIQYRVSGPQIDKVREYAMGLAGVLDGNPNIGDIVYD
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Known secondary structure (DSSP) TTS
SS

B
SS


SSS
SSTTSTT



S
 .........710.........720.........730.........740.........750.........760.........770
Sequence WNEPGKMLKIDIAQDKARQLGLSSEDVAQIMNSVVTGSAVTQVRDDIYLVNVIGRAEDSERGSLETLESL
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Known secondary structure (DSSP) S





ST

S


SSSS

GGG
S
TGGGSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence QIVTPSGTSIPLKAFAKVSYELEQPLVWRRDRKPTITVKASLRGEIQPTDLVARLAPEVKRFADGLPANY
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Known secondary structure (DSSP)
TTS
GGG


S



GGGS



SS

SS
TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence RIEVGGTVEESGKAEGPIAKVVPLMLFLMATFLMIQLQSVQKLFLVASVAPLGLIGVVAALLPTGTPMGF
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Known secondary structure (DSSP)

SSTT


TTTTTTT

 .........920.........930.........940.........950.........960.........970.........980
Sequence VAILGILALIGIIIRNSVILVTQIDAFEKDGKTPWEAVLEATHHRTRPILLTAAAASLGMIPIAREVFWG
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Known secondary structure (DSSP) TT


TTSTSSSS
 .........990.........1000.........1010.........1020..
Sequence PMAYAMIGGIVAATLLTLIFLPALYVAWYRIPEPGRHHHHHH
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Known secondary structure (DSSP) S






TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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