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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6vddD_

Fold library idPDB HeaderMoleculeTitle
c6vddD_1.90PDB header: transferase/dnaChain: D: PDB Molecule: dna polymerase i;


Added to library: Sat Feb 15 08:36:12 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GRALEPGELAAWLSEHSLGSRFGVAVVGTHKAYDADATALAIVAADGDGRYIDTSTLTPEDEAALASWLA
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Known secondary structure (DSSP)


TT
TTTSS



SSS


TTS
TTS

 .........80.........90.........100.........110.........120.........130.........140
Sequence DPGPPKALHEAKLAMHDLAGRGWTLRGVTSDTALAAYLVRPGQRSFTLDDLAVRYLHRELRQAVQTVILR
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Known secondary structure (DSSP)
SSS
SSTTT





TT
S








 .........150.........160.........170.........180.........190.........200.........210
Sequence ACAVLDLADALDQELARIDSLSLLSRMELPVQRTLAEMEHAGIAVDLGMLEQLQSEFADQIRDAAEAAYS
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Known secondary structure (DSSP) TT
T

 .........220.........230.........240.........250.........260.........270.........280
Sequence VIGKQINLGSPKQLQAVLFDELEMPKTKKTKTGYTTDADALQSLFEKTGHPFLQHLLAHRDATRLKVTVD
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Known secondary structure (DSSP) SSS


TT
TSS




SB
SSSB




T
 .........290.........300.........310.........320.........330.........340.........350
Sequence GLLNSVASDGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTEAGRRIRDAFVVGEGYAELMTADYSQIEMR
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Known secondary structure (DSSP) TTB
TTS

SSS
TTS

SS
SS



SSTT

TT

SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence IMAHLSRDAGLIEAFNTGEDLHSFVASRAFSVPIDEVTPELRRRVKAMSYGLAYGLSAYGLAQQLKISTE
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Known secondary structure (DSSP) T
TT

TT

GGG

TT

TT

 .........430.........440.........450.........460.........470.........480.........490
Sequence EAKVQMEQYFDRFGGVRDYLRDVVDQARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSA
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Known secondary structure (DSSP) STTS
TT


GGGG
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence ADIIKVAMINVDQAIKDAGLRSRILLQVHDELLFEVSEGEQGELEQLVREHMGNAYPLDVPLEVSVGYGR
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Known secondary structure (DSSP) TT



SS
TT
TSS

SS


S
 .......
Sequence SWDAAAH
Predicted secondary structure


SS confidence






Known secondary structure (DSSP) BTTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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