PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6v8pA_

Fold library id	PDB Header	Molecule	Title
c6v8pA_	4.10	PDB header: dna binding protein	Chain: A: PDB Molecule: dna polymerase zeta catalytic subunit;

Links to external resources
Added to library: Sat Aug 22 09:23:23 2020

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D Y F R I Q L N N Q D Y Y M S K P T F L D P S H E S L P L N Q F S Q V P N I R V F G A L P T G H Q V L C H V H G I L P Y M F I K Y D G Q I T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S
T T S
B S
T T S
S
B
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T S T L R H Q R C A Q V H K T L E V K I R A S F K K L G N L N F V A D V S V V K G I P F Y G Y H V G W N L F Y K I S L L N P S C L S R I S E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S B S S S S S
S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L I R D G K I F G K K F E I Y E S H I P Y L L Q W T A D F N L F G C S W I N V D R C Y F R S P V L N S I L D I D K L T I N D D L Q L L L D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S S
S
S S
T T
T T S S
S
S S
S S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence F C D F K C N V L S R R D F P R V G N G L I E I D I L P Q F I K N R E K L Q H R D I H H D F L E K L V K P Y V S S A R D M I N E L T M Q R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S B
T T T S
B S S S
T T T B
S S S
S
T T T T T T T T
S T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence E L S L K E Y K E P P E T K R H V H Q W Q S S G E F E A F Y K K A Q H K T S T G Q I P N F E N F I D K N Q K F S A I N T P Y E A L P Q L W P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S
T T S
T T T S S
S
S S B
T T T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence R L P G L R Y G K R A F V Y G E P P F G Y Q D I L N K L E D E G F P K I D Y K D P F F S N P V D L E N K P Y A Y A G K R F E I S S T H V S T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S S T T S
S S
B B S S S T T
T T G G G
B T T B
B
S T T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence R I P V Q F G G E T V S V Y N K P T F D M F S S W K Y A L K P P T Y D A V Q K W Y N K V P S V H D S L T H L T L E I H A N T R S D K I P D P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B S S S
B
S
S S
S
T
S
S S S
T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence A I D E V S M I I W C L E E E T F P L D L D I A Y E G I M I V H K A D S T F P T K I Q H C I N E I P V M F Y E S E F E M F E A L T D L V L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T
T T
S S T T
S
S S
S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence L D P D I L S G F E I H N F S W G Y I I E R C Q K I H Q F D I V R E L A R V K C G I M I T G R H M I N I W R A L R S D V N L T Q Y T I E S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T S S T S
S S S B
S S S
S S
S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence A F N I L H K R L P H F S F E S L T N M W N A K K S T T E L K T V L N Y W L S R A Q I N I Q L L R K Q D Y I A R N I E Q A R L I G I D F H S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T
S S
T T
T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence V Y Y R G S Q F K V E S F L I R I C K S E S F I L L S P G K K D V R K Q K A L E C V P L V M E P E S A F Y K S P L I V L D F Q S L Y P S I M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S T T T
B
T S
S
S
S S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence I G Y N Y C Y S T M I G R V R E I N L T E N N L G V S K F S L P R N I L A L L K N D V T I A P N G V V Y A K T S V R K S T L S K M L T D I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T T S S S
S S
T T
S S S S S S B
T T S B
T T T

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence D V R V M I K K T M N E I G D D N T T L K R L L N N K Q L A L K L L A N V T Y G Y T S A S F S G R M P C S D L A D S I V Q T G R E T L E K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S
T S S
S S S
S S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence I D I I E K D E T W N A K V V Y G D T D S L F V Y L P G K T A I E A F S I G H A M A E R V T Q N N P K P I F L K F E K V Y H P S I L I S K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
S S
T T
T T S
T T
T T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence R Y V G F S Y E S P S Q T L P I F D A K G I E T V R R D G I P A Q Q K I I E K C I R L L F Q T K D L S K I K K Y L Q N E F F K I Q I G K V S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
S
S
T T
S S
T
B T
S

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence A Q D F C F A K E V K L Y K E R I P Y L V V K G K Q R C V S P E E F L E G E N L E L D S E Y Y I N K I L I P P L D R L F N L I G I N V G N W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S
S
T
S S
S S T T T
S

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence A Q E I V T T L S F L I K K L K R Q K E Y Q T L K T V C R T C S Y R Y T S D A G I E N D H I A S K C N S Y D C P V F Y S R V K A E R Y L R D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T T T
T T
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	Y	F	R	I	Q	L	N	N	Q	D	Y	Y	M	S	K	P	T	F	L	D	P	S	H	E	S	L	P	L	N	Q	F	S	Q	V	P	N	I	R	V	F	G	A	L	P	T	G	H	Q	V	L	C	H	V	H	G	I	L	P	Y	M	F	I	K	Y	D	G	Q	I	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S											T	T	S							T	T	S		B	S												T	T	S									S								B			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	S	T	L	R	H	Q	R	C	A	Q	V	H	K	T	L	E	V	K	I	R	A	S	F	K	K	L	G	N	L	N	F	V	A	D	V	S	V	V	K	G	I	P	F	Y	G	Y	H	V	G	W	N	L	F	Y	K	I	S	L	L	N	P	S	C	L	S	R	I	S	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																										S	B	S	S												S	S	S				S										S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	I	R	D	G	K	I	F	G	K	K	F	E	I	Y	E	S	H	I	P	Y	L	L	Q	W	T	A	D	F	N	L	F	G	C	S	W	I	N	V	D	R	C	Y	F	R	S	P	V	L	N	S	I	L	D	I	D	K	L	T	I	N	D	D	L	Q	L	L	L	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T		S	S	S	S						S		S	S										T	T			T	T	S					S						S		S	S			S	S	S					S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	F	C	D	F	K	C	N	V	L	S	R	R	D	F	P	R	V	G	N	G	L	I	E	I	D	I	L	P	Q	F	I	K	N	R	E	K	L	Q	H	R	D	I	H	H	D	F	L	E	K	L	V	K	P	Y	V	S	S	A	R	D	M	I	N	E	L	T	M	Q	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S	S	S	B			T	T	T	S				B	S	S	S							T	T	T	B		S	S	S		S					T	T	T	T	T	T	T	T						S	T	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	E	L	S	L	K	E	Y	K	E	P	P	E	T	K	R	H	V	H	Q	W	Q	S	S	G	E	F	E	A	F	Y	K	K	A	Q	H	K	T	S	T	G	Q	I	P	N	F	E	N	F	I	D	K	N	Q	K	F	S	A	I	N	T	P	Y	E	A	L	P	Q	L	W	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T		S																T	T															S								T	T	T	S	S		S						S	S	B						T	T	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	R	L	P	G	L	R	Y	G	K	R	A	F	V	Y	G	E	P	P	F	G	Y	Q	D	I	L	N	K	L	E	D	E	G	F	P	K	I	D	Y	K	D	P	F	F	S	N	P	V	D	L	E	N	K	P	Y	A	Y	A	G	K	R	F	E	I	S	S	T	H	V	S	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S								S			S	S									T	T	S		S	S						B	B	S	S	S	T	T		T	T	G	G	G		B	T	T	B						B		S	T	T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	R	I	P	V	Q	F	G	G	E	T	V	S	V	Y	N	K	P	T	F	D	M	F	S	S	W	K	Y	A	L	K	P	P	T	Y	D	A	V	Q	K	W	Y	N	K	V	P	S	V	H	D	S	L	T	H	L	T	L	E	I	H	A	N	T	R	S	D	K	I	P	D	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				B	S	S	S		B					S						S	S							S														T							S													S	S	S					T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	A	I	D	E	V	S	M	I	I	W	C	L	E	E	E	T	F	P	L	D	L	D	I	A	Y	E	G	I	M	I	V	H	K	A	D	S	T	F	P	T	K	I	Q	H	C	I	N	E	I	P	V	M	F	Y	E	S	E	F	E	M	F	E	A	L	T	D	L	V	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T												T	T	T			T	T		S	S	T	T												S											S	S						S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	L	D	P	D	I	L	S	G	F	E	I	H	N	F	S	W	G	Y	I	I	E	R	C	Q	K	I	H	Q	F	D	I	V	R	E	L	A	R	V	K	C	G	I	M	I	T	G	R	H	M	I	N	I	W	R	A	L	R	S	D	V	N	L	T	Q	Y	T	I	E	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S					T	T	T	T	S	S												T	S				S					S	S	B							S	S	S																S	S		S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	A	F	N	I	L	H	K	R	L	P	H	F	S	F	E	S	L	T	N	M	W	N	A	K	K	S	T	T	E	L	K	T	V	L	N	Y	W	L	S	R	A	Q	I	N	I	Q	L	L	R	K	Q	D	Y	I	A	R	N	I	E	Q	A	R	L	I	G	I	D	F	H	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S																	T		S	S																											T													T			T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	V	Y	Y	R	G	S	Q	F	K	V	E	S	F	L	I	R	I	C	K	S	E	S	F	I	L	L	S	P	G	K	K	D	V	R	K	Q	K	A	L	E	C	V	P	L	V	M	E	P	E	S	A	F	Y	K	S	P	L	I	V	L	D	F	Q	S	L	Y	P	S	I	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S		S														T	T	T				B									T	S															S				S								S	S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	I	G	Y	N	Y	C	Y	S	T	M	I	G	R	V	R	E	I	N	L	T	E	N	N	L	G	V	S	K	F	S	L	P	R	N	I	L	A	L	L	K	N	D	V	T	I	A	P	N	G	V	V	Y	A	K	T	S	V	R	K	S	T	L	S	K	M	L	T	D	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T		S	T	T	T					S	S	S			S	S					T	T							S	S	S					S	S	S	B				T	T	S				B		T	T	T
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	D	V	R	V	M	I	K	K	T	M	N	E	I	G	D	D	N	T	T	L	K	R	L	L	N	N	K	Q	L	A	L	K	L	L	A	N	V	T	Y	G	Y	T	S	A	S	F	S	G	R	M	P	C	S	D	L	A	D	S	I	V	Q	T	G	R	E	T	L	E	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S		S	S																										T	S	S		S	S	S		S	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	I	D	I	I	E	K	D	E	T	W	N	A	K	V	V	Y	G	D	T	D	S	L	F	V	Y	L	P	G	K	T	A	I	E	A	F	S	I	G	H	A	M	A	E	R	V	T	Q	N	N	P	K	P	I	F	L	K	F	E	K	V	Y	H	P	S	I	L	I	S	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T		S	S	S									S	S							T	T																			T	T	S		T	T																	T	T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	R	Y	V	G	F	S	Y	E	S	P	S	Q	T	L	P	I	F	D	A	K	G	I	E	T	V	R	R	D	G	I	P	A	Q	Q	K	I	I	E	K	C	I	R	L	L	F	Q	T	K	D	L	S	K	I	K	K	Y	L	Q	N	E	F	F	K	I	Q	I	G	K	V	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S	S	T	T			S							S		T	T			S	S																			T		B																		T		S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	A	Q	D	F	C	F	A	K	E	V	K	L	Y	K	E	R	I	P	Y	L	V	V	K	G	K	Q	R	C	V	S	P	E	E	F	L	E	G	E	N	L	E	L	D	S	E	Y	Y	I	N	K	I	L	I	P	P	L	D	R	L	F	N	L	I	G	I	N	V	G	N	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S	S																			S													T		S	S					S	S																	T	T	T			S
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	A	Q	E	I	V	T	T	L	S	F	L	I	K	K	L	K	R	Q	K	E	Y	Q	T	L	K	T	V	C	R	T	C	S	Y	R	Y	T	S	D	A	G	I	E	N	D	H	I	A	S	K	C	N	S	Y	D	C	P	V	F	Y	S	R	V	K	A	E	R	Y	L	R	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T																																				S	T	T						T	T				T	T															T