Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6v3hA_

Fold library idPDB HeaderMoleculeTitle
c6v3hA_3.50PDB header: lipid transport/inhibitorChain: A: PDB Molecule: npc1-like intracellular cholesterol transporter 1;


Added to library: Sat Jul 4 08:58:16 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LYTPKHEAGVCTFYEECGKNPELSGGLTSLSNVSCLSNTPARHVTGEHLALLQRICPRLYNGPNTTFACC
Predicted secondary structure





















































SS confidence





































































Known secondary structure (DSSP)


S

SSS
S

TTT


SS








TTS

TTTT


 .........80.........90.........100.........110.........120.........130.........140
Sequence STKQLLSLESSMSITKALLTRCPACSDNFVSLHCHNTCSPDQSLFINVTRVVERGAGEPPAVVAYEAFYQ
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)
TTTS
TTGGGT

STTS

 .........150.........160.........170.........180.........190.........200.........210
Sequence RSFAEKAYESCSQVRIPAAASLAVGSMCGVYGSALCNAQRWLNFQGDTGNGLAPLDITFHLLEPGQALPD
Predicted secondary structure










































SS confidence





































































Known secondary structure (DSSP) TT
TTTTGGGGSSTTS
GGG

T
GGGS

SS
SSS


T
 .........220.........230.........240.........250.........260.........270.........280
Sequence GIQPLNGKIAPCNESQGDDSAVCSCQDCAASCPVIPPPEALRPSFYMGRMPGWLALIIIFTAVFVLLSAV
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) T


B





SS


TT





SSSS










TTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LVRLRVVSNRNKSPHTILGRFFQNWGTRVASWPLTVLALSFIVVIALAAGLTFIELTTDPVELWSAPKSQ
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) T

SGGGGG

B


S
TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence ARKEKSFHDEHFGPFFRTNQIFVTARNRSSYKYDSLLLGSKNFSGILSLDFLLELLELQERLRHLQVWSP
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP)



SS



SSS

GGG
T

T
 .........430.........440.........450.........460.........470.........480.........490
Sequence EAERNISLQDICYAPLNPYNTSLSDCCVNSLLQYFQNNRTLLMLTANQTLNGQTSLVDWKDHFLYCANAP
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP) TTT
GGGTB

SS

SS

GGGS
SGGGGGTT
T

TT


 .........500.........510.........520.........530.........540.........550.........560
Sequence LTFKDGTSLALSCMADYGAPVFPFLAVGGYQGTDYSEAEALIITFSLNNYPADDPRMAQAKLWEEAFLKE
Predicted secondary structure
































SS confidence





































































Known secondary structure (DSSP)

SS

SS



SB
TTS
B

S

TT
GGG





TTST
 .........570.........580.........590.........600.........610.........620.........630
Sequence MESFQRNTSDKFQVAFSAERSLEDEINRTTIQDLPVFAVSYIIVFLYISLALGSYSRCSRVAVESKATLG
Predicted secondary structure






SS confidence





































































Known secondary structure (DSSP)
TTT
TTTTTTTTTTT


SSSSSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence LGGVIVVLGAVLAAMGFYSYLGVPSSLVIIQVVPFLVLAVGADNIFIFVLEYQRLPRMPGEQREAHIGRT
Predicted secondary structure











SS confidence





































































Known secondary structure (DSSP) TT

B
TTS


TT

 .........710.........720.........730.........740.........750.........760.........770
Sequence LGSVAPSMLLCSLSEAICFFLGALTPMPAVRTFALTSGLAIILDFLLQMTAFVALLSLDSKRQEASRPDV
Predicted secondary structure















SS confidence





































































Known secondary structure (DSSP) TT
S
TTTT


S
 .........780.........790.........800.........810.........820.........830.........840
Sequence LCCKEGLLLRFFRKIYAPFLLHRFIRPVVMLLFLTLFGANLYLMCNINVGLDQELALPKDSYLIDYFLFL
Predicted secondary structure




















SS confidence





































































Known secondary structure (DSSP) S




TTSTTTTT


BS

SBTT
T
 .........850.........860.........870.........880.........890.........900.........910
Sequence NRYLEVGPPVYFVTTSGFNFSSEAGMNATCSSAGCKSFSLTQKIQYASEFPDQSYVAIAASSWVDDFIDW
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)
SS


SS

SSSTT

STTS
TT
T
TTTS




 .........920.........930.........940.........950.........960.........970.........980
Sequence LTPSSSCCRLYIRGPHKDEFCPSTDTSFNCLKNCMNRTLGPVRPTAEQFHKYLPWFLNDPPNIRCPKGGL
Predicted secondary structure






























SS confidence





































































Known secondary structure (DSSP)
GGGT
S

SSTTTTS
TT

SSS

SS


SSS



TT



SS



 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence AAYRTSVNLSSDGQVIASQFMAYHKPLRNSQDFTEALRASRLLAANITADLRKVPGTDPNFEVFPYTISN
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) TTTTTTT



STTSTT

TT


TT
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence VFYQQYLTVLPEGIFTLALCFVPTFVVCYLLLGLDMCSGILNLLSIIMILVDTIGLMAVWGISYNAVSLI
Predicted secondary structure




SS confidence





































































Known secondary structure (DSSP) GGGGTTTS
T

BS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence NLVTAVGMSVEFVSHITRSFAVSTKPTRLERAKDATVFMGSAVFAGVAMTNFPGILILGFAQAQLIQIFF
Predicted secondary structure







SS confidence





































































Known secondary structure (DSSP) TS


SSGGGG

BT
 .........1200.........1210.........1220.........1230..
Sequence FRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALVQEEKLAS
Predicted secondary structure













SS confidence









































Known secondary structure (DSSP) T






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D