PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c6uxgB_

Fold library id	PDB Header	Molecule	Title
c6uxgB_	2.15	PDB header: dna binding protein	Chain: B: PDB Molecule: vibrio metoecus sp. rc341 nucc;

Links to external resources
Added to library: Sat Dec 28 08:22:16 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q D W Q L S E L L E N L H A D V Q H K L T T V R K S F K A E N V W V D L F N Q Y L P E R Y R A S R A F V V D S E N Q F S E Q I D V V I Y D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
T T
T T S
B
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Q Y S P F I F H Y A E Q L I I P A E S V Y A V F E V K Q T L N K Q H I D A A R K K V A S V R A L H R T S L P I P V H S P R E L I G I I G G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
T T G G G
S S T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L T L E N E L K I P D T L M G H L D H D K A D K G M L N I G C A A D D C F F Y Y D N D H Q R M Q V M Q H K K A T T A F L F E L L S Q L Q K C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
T T
T T
T T T T T T T
T T

. . . . . . . . . 220 . . . . . . . . . 230

Sequence G T V P M I D I H A Y G K W L T P R I S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	D	W	Q	L	S	E	L	L	E	N	L	H	A	D	V	Q	H	K	L	T	T	V	R	K	S	F	K	A	E	N	V	W	V	D	L	F	N	Q	Y	L	P	E	R	Y	R	A	S	R	A	F	V	V	D	S	E	N	Q	F	S	E	Q	I	D	V	V	I	Y	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S									T	T																												S		T	T											T	T	S		B											S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Q	Y	S	P	F	I	F	H	Y	A	E	Q	L	I	I	P	A	E	S	V	Y	A	V	F	E	V	K	Q	T	L	N	K	Q	H	I	D	A	A	R	K	K	V	A	S	V	R	A	L	H	R	T	S	L	P	I	P	V	H	S	P	R	E	L	I	G	I	I	G	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S		S						T	T						G	G	G									S			S																T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	T	L	E	N	E	L	K	I	P	D	T	L	M	G	H	L	D	H	D	K	A	D	K	G	M	L	N	I	G	C	A	A	D	D	C	F	F	Y	Y	D	N	D	H	Q	R	M	Q	V	M	Q	H	K	K	A	T	T	A	F	L	F	E	L	L	S	Q	L	Q	K	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S			S			S												T	T		T	T								T	T	T							T	T	T	T								T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	G	T	V	P	M	I	D	I	H	A	Y	G	K	W	L	T	P	R	I	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	T	S