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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6um2A_

Fold library idPDB HeaderMoleculeTitle
c6um2A_4.32PDB header: sugar binding proteinChain: A: PDB Molecule: cation-independent mannose-6-phosphate receptor;


Added to library: Sat Feb 29 08:24:44 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ALLCGVSDGKQRFDLSALARHSELEQNWEAVDGSQREAEKKHFFINICHRVLQTGQARGCPEDAAVCAVD
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Known secondary structure (DSSP)




SS

TTTS

S

S


B


SSS
SS




BB
SSS



STTTTT


SSSB

 .........80.........90.........100.........110.........120.........130.........140
Sequence KNGSKNLGRFISSPTREKGNIQLSYSDGDECGGGQKIITNITLMCKPGDLESAPVLTTSRADGCFYEFEW
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Known secondary structure (DSSP) SS






S


SSS



S

TT



B

SS
S





SSSSB
 .........150.........160.........170.........180.........190.........200.........210
Sequence RTAAACVLSRTEGDNCTVFDSQAGFSFDLTPLTKKDAYKVETDKYEFHINVCGPVSVGACPPDSGACQVS
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Known secondary structure (DSSP) SSSSS
S

SSSB


TTT



B
GGG

SS

B


SS
TTS



SSS
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence RSDRKSWNLGRSNAKLSYYDGMIQLTYRDGTPYNNEKRTPRATLITFLCDRDAGVGFPEYQEEDNSTYNF
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Known secondary structure (DSSP) TTTT





SS





B
S
TT

B
B

SS

S

SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence RWYTSYACPEEPLECIVTDPVTLDQYDLSRLAKSEGGPGGNWYSLDNGGARSTWRKYYINVCRPLNPVPG
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Known secondary structure (DSSP) B
GGGS










SSS

B


STTS

SS
TT
S

SSSSS

SSS

S

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence CDRYASACQMKYQGEQGSYSETVSISNLGVAKTGPMVEDSGSLLLEYVNGSACTTSDQRRTTYTTRIHLV
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Known secondary structure (DSSP) S
SS
S

SS
TTT








S


STT
B






STTS



BB

 .........430.........440.........450.........460.........470.........480.........490
Sequence CSTGSLYTHPIFSLNWECVVSFLWNTAAACPIRITTDIDQVCSIKDPNSGYVFDLNPLNNSRGYVVLGIG
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Known secondary structure (DSSP)

S

SS



SS


SS
S
B

GGG


TTTTTT
GGG

TT



SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence KTFLFNVCGDMPACGTLDGKPASGCEAEVLVGLEKSLQLSTEGFITLNYTGLPSHPNGRADAFIIRFVCN
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Known secondary structure (DSSP) S



SS

STT

STT

SS








B



SSS



BSS

TTS

S






B
 .........570.........580.........590.........600.........610.........620.........630
Sequence DDVYPGTPKFLHQDIDSSLGIRDTFFEFETALACVPSPVDCQVTDPAGNEYDLSGLSKARKPWTAVDTFD
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Known secondary structure (DSSP) SSS
S










SSSS








BSTTS







B

TTS

B

TTTT

SS
B



 .........640.........650.........660.........670.........680.........690.........700
Sequence EGKKRTFYLSVCTPLPYIPGCHGTAVGCCLVTEDSKLNLGVVQISPQVGANGSLSLVYVNGDKCKNQRFS
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Known secondary structure (DSSP) SS



SSS




TT

SSS
S

SS










SSSS






TTTS


 .........710.........720.........730.........740.........750.........760.........770
Sequence TRINLECAHTTGSPTFQLQNDCEYVFLWRTVEACPVVRAEGDYCEVRDPRHGNLYNLIPLGLNDTVVRAG
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Known secondary structure (DSSP)
SS



TTGGGS



BTTB
B
SSS

B


TTTTSS


T
 .........780.........790.........800.........810.........820.........830.........840
Sequence EYTYYFRVCGELTSGVCPTSDKSKVISSCQEKRGPQGFQKVAGLFNQKLTYENGVLKMNYTGGDTCHKVY
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Known secondary structure (DSSP) T

TTS



SS




SSS

S
SSTT



B







TT


SB
SSS
 .........850.........860.........870.........880.........890.........900.........910
Sequence QRSTTIFFYCDRSTQAPVFLQETSDCSYLFEWRTQYACPPYDLTECSFKNEAGETYDLSSLSRYSDNWEA
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Known secondary structure (DSSP) B


SS


TTS
SSS








B

SSSSS

B

TT

SSS

B
 .........920.........930.........940.........950.........960.........970.........980
Sequence VTGTGSTEHYLINVCKSLSPQAGSDPCPPEAAVCLLGGPKPVNLGRVRDSPQWSQGLTLLKYVDGDLCPD
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Known secondary structure (DSSP)


TT
SS
SSS




SSSS


TT
SSSS



B

S


SSSSS

B


B
TT
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence QIRKKSTTIRFTCSESHVNSRPMFISAVEDCEYTFSWPTAAACAVKSNVHDDCQVTNPATGHLFDLSSLS
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Known secondary structure (DSSP) SSSB




TT






BTTT
SSSS

S

S
SSS
TTT


TTS
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence GRAGFTAAYSEKGLVYLSVCGDNENCANGVGACFGQTRISVGKASKRLTYVDQVLQLVYEGGSPCPSKTG
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Known secondary structure (DSSP)
SS

SSSS

TTS

SSS
TT
S
SSS

B






SS

SB

SSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence LSYKSVISFVCRPEVGPTNRPMLISLDKRTCTLFFSWHTPLACEQTTECSVRNGSSLIDLSPLIHRTGGY
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Known secondary structure (DSSP)
B

B
SS

TT
S




TTTT


BSTT

S





TT


STTS
SSS
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence EAYDESEDDGPDFYINICQPLNPMHGLACPAGTAVCKVPVDGPPIDIGRVAGPPILNPIANEVYLNFESS
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Known secondary structure (DSSP)


SS





SSS




TT



SS
S

SSS


SS
B

TTT


B
S
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence TPCLADRHFNYTSLITFHCKRGVSMGTPKLLRTSVCDFVFEWETPLVCPDEVKTDGCSLTDEQLYYSFNL
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Known secondary structure (DSSP) S

TT

SS





SS




SSSSSS


SS
S
SB


SSS



BG
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence SSLSKSTFKVTRGPHTYSVGVCTAAAGLDEGGCKDGAVCLLSGSKGASFGRLASMKLDYRHQDEAVILSY
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Known secondary structure (DSSP) GGG






TT

SSS



SS
S

TTBS

SSSS

B
BBGGG
TTTT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence ANGDTCPPETEDGEPCVFPFVFNGKSYEECVVESRARLWCATTANYDRDHEWGFCKHSTSHRTSVIIFKC
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Known secondary structure (DSSP)
B
SB


B
SSS




STTSS
B
SSSSS
SSSBTTTS


B



B


B
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence DEDADVGRPQVFSEVRGCEVTFEWKTKVVCPPKKMECKFVQKHRTYDLRLLSSLTGSWSFVHNGASYYIN
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Known secondary structure (DSSP)
TT
SS



TTT


BSTT


SS





BTTB



SSS

SS


TT

 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence LCQKIYKGPQDCSERASVCKKSTSGEVQVLGLVHTQKLDVVDDRVIVTYSKGHYCGDNKTASAVIELTCA
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Known secondary structure (DSSP) TTS

SS

TT

SS
SB
SSS



SSS


SS



S



SSS



 .........1620.........1630........
Sequence KTVGRPSFTRFDVDSCTYHFSWDSRAAC
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SS confidence



























Known secondary structure (DSSP) SS




B



SSS
GGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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