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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6um1A_

Fold library idPDB HeaderMoleculeTitle
c6um1A_3.46PDB header: sugar binding proteinChain: A: PDB Molecule: cation-independent mannose-6-phosphate receptor;


Added to library: Sat Feb 29 08:21:27 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AEFPELCSYTWEAVDTKNNMLYKINICGNMGVAQCGPSSAVCMHDLKTDSFHSVGDSLLKTASRSLLEFN
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Known secondary structure (DSSP)

STTSSSS


TTTT
SS


SS
SS
TTBSTTT



BGGG
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence TTVNCKQQNHKIQSSITFLCGKTLGTPEFVTATDCVHYFEWRTTAACKKNIFKANKEVPCYAFDRELKKH
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Known secondary structure (DSSP)
SSTT

SS





SSSSS



SS

SSB



TT

 .........150.........160.........170.........180.........190.........200.........210
Sequence DLNPLIKTSGAYLVDDSDPDTSLFINVCRDIEVLRASSPQVRVCPTGAAACLVRGDRAFDVGRPQEGLKL
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Known secondary structure (DSSP)
GGG

SSS
B
S
SS


TTB



SS
SSSSSSSS
TT
SS

B
SS
B




B
S

B
 .........220.........230.........240.........250.........260.........270.........280
Sequence VSNDRLVLSYVKEGAGQPDFCDGHSPAVTITFVCPSERREGTIPKLTAKSNCRFEIEWVTEYACHRDYLE
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Known secondary structure (DSSP)
SSS


SS


TTSTT





SS



S
SSS
GGGS


 .........290.........300.........310.........320.........330.........340.........350
Sequence SRSCSLSSAQHDVAVDLQPLSRVEASDSLFYTSEADEYTYYLSICGGSQAPICNKKDAAVCQVKKADSTQ
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Known secondary structure (DSSP) SSS



SS
S




GGGTS

SSS
SS

SSS


SS



TTS
S


S
SS
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence VKVAGRPQNLTLRYSDGDLTLIYFGGEECSSGFQRMSVINFECNQTAGNNGRGAPVFTGEVDCTYFFTWD
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Known secondary structure (DSSP)
TTSTT



B
SSS
B

SS
T




BTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence TKYACVHEKEALLCGVSDGKQRFDLSALARHSELEQNWEAVDGSQREAEKKHFFINICHRVLQTGQARGC
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Known secondary structure (DSSP) STT



S

S

TT

TT


S
SS



B
S


SS


TTSS



TTTTTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence PEDAAVCAVDKNGSKNLGRFISSPTREKGNIQLSYSDGDECGGGQKIITNITLMCKPGDLESAPVLTTSR
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Known secondary structure (DSSP)
SS
S
SS



B

S

TTBS
SB
TTS
B
B
TT
TT






 .........570.........580.........590.........600.........610.........620.........630
Sequence ADGCFYEFEWRTAAACVLSRTEGDNCTVFDSQAGFSFDLTPLTKKDAYKVETDKYEFHINVCGPVSVGAC
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Known secondary structure (DSSP) SSSSB

STTS



SSS
SSS


GGG

TT



SS
TTS



TTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence PPDSGACQVSRSDRKSWNLGRSNAKLSYYDGMIQLTYRDGTPYNNEKRTPRATLITFLCDRDAGVGFPEY
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Known secondary structure (DSSP)
TTBSSSS



B



TT

S
B
S
TT

B


TTSTT

 .........710.........720.........730.........740.........750.........760.........770
Sequence QEEDNSTYNFRWYTSYACPEEPLECIVTDPVTLDQYDLSRLAKSEGGPGGNWYSLDNGGARSTWRKYYIN
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Known secondary structure (DSSP)

SSSSSSSS









SSS



TTS


TTSS





SSTTSS

 .........780.........790.........800.........810.........820.........830.........840
Sequence VCRPLNPVPGCDRYASACQMKYQGEQGSYSETVSISNLGVAKTGPMVEDSGSLLLEYVNGSACTTSDQRR
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Known secondary structure (DSSP) SSS




TTS
SS
S


S
SS






BB

S


GGG
BS
SB

SSTTS
 .........850.........860.........870.........880.........890.........900.........910
Sequence TTYTTRIHLVCSTGSLYTHPIFSLNWECVVSFLWNTAAACPIRITTDIDQVCSIKDPNSGYVFDLNPLNN
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Known secondary structure (DSSP)
B




SB


B


B
SS

STTS





BSS

S
TTT


GGG

 .........920.........930.........940.........950.........960.........970.........980
Sequence SRGYVVLGIGKTFLFNVCGDMPACGTLDGKPASGCEAERLVGLEKSLQLSTEGFITLNYTGLPSHPNGRA
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Known secondary structure (DSSP) TT

TTT


SSS

TTS

BTTB
S












SSS

S
BTTSS
B
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence DAFIIRFVCNDDVYPGTPKFLHQDIDSSLGIRDTFFEFETALACVPSPVDCQVTDPAGNEYDLSGLSKAR
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Known secondary structure (DSSP) B



SS

S








SSS




TTSS



B



SSS
B
GGGG

S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence KPWTAVDTFDEGKKRTFYLSVCTPLPYIPGCHGTAVGCCLVTEDSKLNLGVVQISPQVGANGSLSLVYVN
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Known secondary structure (DSSP) S



B

SSTT
S



SSS




SSS
TTS
S
BSTT


B




SS

STTB

 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence GDKCKNQRFSTRINLECAHTTGSPTFQLQNDCEYVFLWRTVEACPVVRAEGDYCEVRDPRHGNLYNLIPL
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Known secondary structure (DSSP)

SBTTB

BB

SS



TT

STTS
B


B
SSS

B
SSS

B


GGG
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence GLNDTVVRAGEYTYYFRVCGELTSGVCPTSDKSKVISSCQEKRGPQGFQKVAGLFNQKLTYENGVLKMNY
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SS confidence





































































Known secondary structure (DSSP) SSS

SS

TTS


S
S




SS

B


STT






B



TT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence TGGDTCHKVYQRSTTIFFYCDRSTQAPVFLQETSDCSYLFEWRTQYACPPYDLTECSFKNEAGETYDLSS
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Known secondary structure (DSSP)


SB
SSSSB
SS

SS
TTSTTS
SS



S
TTS

GG
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence LSRYSDNWEAVTGTGSTEHYLINVCKSLSPQAGSDPCPPEAAVCLLGGPKPVNLGRVRDSPQWSQGLTLL
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Known secondary structure (DSSP) G

SSS

B

SS
S

SSSS




SSS


TT
SSSS


S

TT
 .........1410.........1420.........1430.........1440.........1450.........1460.........1470
Sequence KYVDGDLCPDQIRKKSTTIRFTCSESHVNSRPMFISAVEDCEYTFSWPTAAACAVKSNVHDDCQVTNPAT
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Known secondary structure (DSSP)

S

TTSSS





S
SS


TTT

STTSB


SSS

TTT
 .........1480.........1490.........1500.........1510.........1520.........1530.........1540
Sequence GHLFDLSSLSGRAGFTAAYSEKGLVYLSVCGDNENCANGVGACFGQTRISVGKASKRLTYVDQVLQLVYE
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Known secondary structure (DSSP)



GGG

TT
SSSS

SSS

SSS
SS
S

BTTTT









SS



 .........1550.........1560.........1570.........1580.........1590.........1600.........1610
Sequence GGSPCPSKTGLSYKSVISFVCRPEVGPTNRPMLISLDKRTCTLFFSWHTPLACEQTTECSVRNGSSLIDL
Predicted secondary structure






































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Known secondary structure (DSSP)




SSSSS





SSSTT





TTTT

SSS
S




TT
 .........1620.........1630.........1640.........1650.........1660.........1670.........1680
Sequence SPLIHRTGGYEAYDESEDDGSDTSPDFYINICQPLNPMHGLACPAGTAVCKVPVDGPPIDIGRVAGPPIL
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SS confidence





































































Known secondary structure (DSSP) GGG

SSS



B


SS


TT

SSS



BTTB


TT
S

TT





SS
 .........1690.........1700.........1710.........1720.........1730.........1740.........1750
Sequence NPIANEVYLNFESSTPCLADRHFNYTSLITFHCKRGVSMGTPKLLRTSVCDFVFEWETPLVCPDEVKTDG
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SS confidence





































































Known secondary structure (DSSP)
SSSS

SS

SSTTSSS


SS





B

SSTTSS




S

 .........1760.........1770.........1780.........1790.........1800.........1810.........1820
Sequence CSSLSKSTFKVTRGPHTYSVGVCTAAAGLDEGGCKDGAVCLLSGSKGASFGRLASMKLDYRHQDEAVILS
Predicted secondary structure











































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Known secondary structure (DSSP)

TTSS

SSS

SSS

STTTTSS
SSSSS



STTT



TTTT
 .........1830.........1840.........1850.........1860.........1870.........1880.........1890
Sequence YANGDTCPPETEDGEPCVFPFVFNGKSYEECVVESRARLWCATTANYDRDHEWGFCKHSTSHRTSVIIFK
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Known secondary structure (DSSP)
SSS





SSS



S
TTSS
B
SSSSS
SSSBSTTT





S


 .........1900.........1910.........1920.........1930.........1940.........1950.........1960
Sequence CDEDADVGRPQVFSEVRGCEVTFEWKTKVVCPPKKMECKFVQKHRTYDLRLLSSLTGSWSFVHNGASYYI
Predicted secondary structure































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Known secondary structure (DSSP) B
SS
SS



STTS

BSSSS







SS

TTT

SSS





SS


B
 .........1970.........1980.........1990.........2000.........2010.........2020.........2030
Sequence NLCQKIYKGPQDCSERASVCKKSTSGEVQVLGLVHTQKLDVVDDRVIVTYSKGHYCGDNKTASAVIELTC
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Known secondary structure (DSSP)
SSS

SS

SSS
TTTS

TTS



SS


TT


S
S
SSSSS




B

 .........2040.........2050.........2060.........2070.........2080.........2090.........2100
Sequence AKTVGRPSFTRFDVDSCTYHFSWDSRAACMVNGTITNPANGRSFSLGDIYFKRFSASGDVRTNGDRYIYE
Predicted secondary structure





































SS confidence





































































Known secondary structure (DSSP)
SS

SSS

STT



SS
TTTT


TTTS
TT
SSSS


SSS
 .........2110.........2120.........2130.........2140.........2150.........2160.........2170
Sequence IQLSSITGSSSPACSGASICQRKANDQHFSRKVGTSNQTRYYVQDGDLDVVFTSSSKCGKDKTKSVSSTI
Predicted secondary structure








































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Known secondary structure (DSSP)

S





S



S


SS
SSS





SS

B
SS
B
SSS

TT

S




 .........2180.........2190.........2200........
Sequence FFHCDPLVKDGIPEFSHETADCQYLFSWHTSAVCPLGA
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SS confidence





































Known secondary structure (DSSP)
S
TTSSS





TTT

SS


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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