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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6u9fA_

Fold library idPDB HeaderMoleculeTitle
c6u9fA_4.35PDB header: transport proteinChain: A: PDB Molecule: pdpa;


Added to library: Sat Oct 26 08:26:39 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MIAVKDITDLNIQDLTSEVINGDTTPSSAKFASYIINYNLSNINLIKILYRKGLISKLDYEKYKRYCIIS
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Known secondary structure (DSSP)

TTTTTT



STTTTTTS

TTTT

TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence RFKNNILYFSTNYKDSQSLKIAIKILELPHDYIRKIDVLLTSIDSAINKTIIKQLNKLRSSLSRGYNNVL
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Known secondary structure (DSSP) T




TTSTTT




TTT




TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence QKQEITINIKPINKNFELEDIHNSLTLKNPHIEKLEVCENIYGINGWLTFDLAYINNHKDFNFLLSPNQP
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Known secondary structure (DSSP) SB
TTS
B




S

S




SS



S

TSTT

 .........220.........230.........240.........250.........260.........270.........280
Sequence ILLDIQINDSFHHKRTTRFIAIGFNSNSIDIHENGVKKFKIQFHDPLKALWTKHKPSYIALNKSLDDIFK
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Known secondary structure (DSSP)




SS











T





 .........290.........300.........310.........320.........330.........340.........350
Sequence DNFFFDSLFSLDTNKSNNLKIRIPQAFISTVNRNFYDFFIQQLEQNKCYLKYFCDKKSGKVSYHVVDQVD
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Known secondary structure (DSSP) TT


SSS

SS

STTS



SSS
TT


B
SSS

BSS

 .........360.........370.........380.........390.........400.........410.........420
Sequence NDLQRNIVNSDEDLKDKLSPYDISCFKKQILISNKSNFYVKEKNICPDVTLNTQRKEDRKISDTLVKPFS
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Known secondary structure (DSSP) TT


SSS



S

TTSTTS
S



S




SS

S
S



S

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence SILKDNLQSVEYIQSNNDDKQEIITTGFEILLTSRNTLPFLDTEITLSKLDNDQNYLLGATDIKSLYISQ
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Known secondary structure (DSSP)

B




SS














BSS

TTS

S

S

B




SSS

SS


 .........500.........510.........520.........530.........540.........550.........560
Sequence RKLLFKRSKYCSKQLYENHDNSITYKIKDYSNLTPEYPKYKSFSNFYINGRITIGENVNNDSKKAYKFFK
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Known secondary structure (DSSP)

TT

STT
















S
SS

STTSS



B
 .........570.........580.........590.........600.........610.........620.........630
Sequence NHKPEESSIAEFQENGEKGTSAILNSKADILYAIEIAKEMLSDKSSDKPIIYLPLKVNINSANNQFIPLR
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Known secondary structure (DSSP) SSSS
B

SSS


TT
SSSS

SS

SS
BB
TTSS
TT

S




S
SSB
SS
B



 .........640.........650.........660.........670.........680.........690.........700
Sequence NDDIILIEIQSFTKGEIIELISNSAISTKKAQQQLLQRQLLGSKENCEMAYTQTSDSETFSLTQVNEDCE
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Known secondary structure (DSSP) SS

TT


S



S
SSS







TGGG





SS





BTTB
 .........710.......
Sequence NSFLINDKKGIFLRYKS
Predicted secondary structure






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Known secondary structure (DSSP)
SSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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