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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6u94A_

Fold library idPDB HeaderMoleculeTitle
c6u94A_2.35PDB header: lipid transportChain: A: PDB Molecule: rnd efflux system, outer membrane lipoprotein, nodt family;


Added to library: Sat Oct 5 08:47:56 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ELGWRNFLADAQLQQLVALALANNRDLRVATLDIDEARALYRIQRAAQDASVGLTHFEIDLFGRVRSLSH
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Known secondary structure (DSSP)



TTTB





TSGGGG

TTTT

TS
 .........80.........90.........100.........110.........120.........130.........140
Sequence AAQEQYLATEEARRSVHISLVAEVANTYLTLLADRALLALAQDTLRSQQDAADMIHRGKQAGAMAQLDEH
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Known secondary structure (DSSP) TTSS


TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence RADTQVQTARVAAEQYTRQIAQDENALAVLIGGPLPAGVSRAAPLGDRALLAEFPAGLPSTLLERRPDIM
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Known secondary structure (DSSP) TS


T


STT


B



TT
BGGGGGGS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AAEHRLIAANAQIGAARAAFFPRITLTGALGVASASLAGLFSGGVAWLFVPQLTLPIFNAGSNQANLDLA
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Known secondary structure (DSSP) TTB




B
B
GGG
B
TTTSSS







S
SBSSS
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence TVRRDINVAGYEHTIQDAFREVADNLAARATYEREVKAQEAMIRDLAETKRLADMRFRNGVDDYFGVFDA
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Known secondary structure (DSSP) TSTSS
T
 .........360.........370.........380.....
Sequence QRQLFAAQQLLVTYKLAGLTSRVTLYKALGGGWVE
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Known secondary structure (DSSP) TTSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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