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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6u8yL_

Fold library idPDB HeaderMoleculeTitle
c6u8yL_4.00PDB header: membrane proteinChain: L: PDB Molecule: nadh dehydrogenase subunit d;


Added to library: Sat Sep 12 09:23:28 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YPIDKDTYELFFGPQHMATENFSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPE
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Known secondary structure (DSSP)

S
SS




STTSSSSS
TT

SS


STTTTTSS
SSTTTTTTGGGSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PDVPEAIYSMAVDEIIGWEVPERAQWIRTLVLEMARVTAYLFWIMGLSFKLGVYTAGQWAAAYRERFMAL
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Known secondary structure (DSSP) SST



TTSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence FEQLTGARVYHIYTIPGGVRRDIPGDKWLRQVRDTVEYLKDKLKDFDNVLFENYITYKRLEGIGVMDKKF
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Known secondary structure (DSSP) TSSSSS




SSS
SS



GGGTTS
TTSSS
S


STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence ALEEGVTGPNLRATGVAYDVRKSDPYLLYPELDFEIPVLKEGDALARVLVRRYELEQDLYIIEQLLDMGP
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Known secondary structure (DSSP) TTTTT

SSSTTTSS



S

SS
TTT






S

STT

 .........290.........300.........310.........320.........330.........340.........350
Sequence PSGPYKVQDPKLKNLPRFKVPPGEAFAHVEATKGDFGAYVVSDGGHKPYRVHIRGPSIAHGVRVLEQLLV
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Known secondary structure (DSSP)
S

SSS
SGGG
SSS




S

SS


SSSS

TTSSSSSSTTTTTST
 .........360.........370...
Sequence GARLADVPAILMSLDNCPPDIDR
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Known secondary structure (DSSP) T
BGGGTTT

GGGT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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