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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6u8yH_

Fold library idPDB HeaderMoleculeTitle
c6u8yH_4.00PDB header: membrane proteinChain: H: PDB Molecule: nadh dehydrogenase subunit n;


Added to library: Sat Sep 12 09:25:39 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SQVAALLIALPLISAFFVPVLKQIGKSLIKPFLVIITLLQTLIASWAFVQVYSTGKPIIIYAGGWKPPIG
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Known secondary structure (DSSP)
GGG
TTTSSSS
STTSTTTSS

SSS

TTSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence INLYIGHFAALFILVIAVVSFLMALFNFKAVTVEPIDKYAMLFLLLLLGATGMIATGDIFNLFVFMEITA
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Known secondary structure (DSSP)

TTTTTTSTTS
TTTTT

B
 .........150.........160.........170.........180.........190.........200.........210
Sequence ISAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLVGVALIYGATGTLNMAHLAMLANDINPTVVQVGLAL
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Known secondary structure (DSSP) SSTT
SSTTS


BTTTTSS
TTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence IIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLFKDVSGWSSLTKLLIAMAT
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Known secondary structure (DSSP) S
SSSTTTTTTSS
TTTSTTSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence LTVVFAELSALRQKNVKRMIAYSSIGQVGLIALALSLGTQEGVSAGVFHMLNHAIVKTMMFMAIGYVGIT
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Known secondary structure (DSSP) TTT

STSSSSSSSTTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence LGGTMIENFEGLGKRMPLTSLSLTIGGIATVGVPLFNVFWSKLRIILAAAHEGNLWPVALVLFASVVEAV
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Known secondary structure (DSSP) TTS

GGGTS

SSSS
TT
SS
SSSSS
SSSSTTT
 .........430.........440.........450.........460.........470.........480.......
Sequence YYFRLIHTMWFKGKSGERIPEGAIAIVLLLLAMLIIVIGVYPTPFWNLVTKAGSDIVEVSKYVANVL
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Known secondary structure (DSSP) TTSSS








TTSTTTTTTTTTT

TSTTTS
STT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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