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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6u7hB_

Fold library idPDB HeaderMoleculeTitle
c6u7hB_3.10PDB header: viral proteinChain: B: PDB Molecule: spike glycoprotein;


Added to library: Sat Nov 16 08:31:08 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence ENVFAVESGGYIPSDFAFNNWFLLTNTSSVVDGVVRSFQPLLLNCLWSVSGLRFTTGFVYFNGTGRGDCK
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Known secondary structure (DSSP)






TTS


TT


TT



BSS


SSTTS



TTSTT




 .........80.........90.........100.........110.........120.........130.........140
Sequence GFSSDVLSDVIRYNLNFEENLRRGTILFKTSYGVVVFYCTNNLGNFYCFVNTTIGTETTSAFVGALPKTV
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Known secondary structure (DSSP) S



S

S
STTTTSSSTT



S
TT

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence REFVISRTGHFYINGYRYFTLGNVEAVNFNVTTAETTDFFTVALASYADVLVNVSQTSIANIIYCNSVIN
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Known secondary structure (DSSP)
TT
TT





S
TT
TTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence RLRCDQLSFYVPDGFYSTSPIQSVELPVSIVSLPVYHKHMFIVLYVDFKPQSGGGKCFNCYPAGVNITLA
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Known secondary structure (DSSP) TTT
SS

S




SS











BTTB
TTSS
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence NFNETKGPLCVDTSHFTTKYVAVYANVGRWSASINTGNCPFSFGKVNNFVKFGSVCFSLKDIPGGCAMPI
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Known secondary structure (DSSP) T

GGG
S

SS
S


TT

TT
SS
TTGGGTT
SS

TT
 .........360.........370.........380.........390.........400.........410.........420
Sequence VANWAYSKYYTIGTLYVSWSDGDGITGVPQPVEGVSSFMNVTLDKCTKYNIYDVSGVGVIRVSNDTFLNG
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Known secondary structure (DSSP) TTT
SS


SS



B

BTSTT
S



S
 .........430.........440.........450.........460.........470.........480.........490
Sequence ITYTSTSGNLLGFKDVTKGTIYSITPCNPPDQLVVYQQAVVGAMLSENFTSYGFSNVVELPKFFYASNGT
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Known secondary structure (DSSP) S
TT


TTT


SS

SSSSSSSS
GGG
STTS

 .........500.........510.........520.........530.........540.........550.........560
Sequence YNCTDAVLTYSSFGVCADGSIIAVQSAIVTANLSIPSNWTISVQVEYLQITSTPIVVDCSTYVCNGNVRC
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Known secondary structure (DSSP) S



TTTTS



TTS
B







TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence VELLKQYTSACKTIEDALRNSARLESADVSEMLTFDKKAFTLANVSSFGDYNLSSVIPSLPTSGSRVAGR
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Known secondary structure (DSSP) TTSTT




SGGGTTTS
GGGTS
B

TTSSSS
B
 .........640.........650.........660.........670.........680.........690.........700
Sequence SAIEDILFSKIVTSGLGTVDADYKNCTKGLSIADLACAQYYNGIMVLPGVADAERMAMYTGSLIGGIALP
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Known secondary structure (DSSP)
S


TT

S


GGGTTT
SS


TT


SS
TTT

 .........710.........720.........730.........740.........750.........760.........770
Sequence FSLAIQARLNYVALQTDVLQENQKILAASFNKAMTNIVDAFTGVNDAITQTSQALQTVATALNKIQDVVN
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Known secondary structure (DSSP) TT
SSSTTSS




 .........780.........790.........800.........810.........820.........830.........840
Sequence QQGNSLNHLTSQLRQNFQAISSSIQAIYDRLDPPQADQQVDRLITGRLAALNVFVSHTLTKYTEVRASRQ
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Known secondary structure (DSSP) TT

TTSS
S
S
 .........850.........860.........870.........880.........890.........900.........910
Sequence LAQQKVNECVKSQSKRYGFCGNGTHIFSIVNAAPEGLVFLHTVLLPTQYKDVEAWSGLCVDGTNGYVLRQ
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Known secondary structure (DSSP) TTS


SSSSSSSSTT

B
STTT

 .........920.........930.........940.........950.........960.....
Sequence PNLALYKEGNYYRITSRIMFEPRIPTMADFVQIENCNVTFVNISRSELQTIVPEY
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Known secondary structure (DSSP) TTTTTT







TTSS


TTS
TTGGGGT
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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