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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6tnyA_

Fold library idPDB HeaderMoleculeTitle
c6tnyA_3.08PDB header: replicationChain: A: PDB Molecule: dna polymerase delta catalytic subunit;


Added to library: Sat Dec 21 08:31:24 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RWLRPTPPALDPQTEPLIFQQLEIDHYVGPAQPVSVPVLRAFGVTDEGFSVCCHIHGFAPYFYTPAPPGF
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Known secondary structure (DSSP)










TTT









SSS






SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence GPEHMGDLQRELNLAISRDSRGGRELTGPAVLAVELCSRESMFGYHGHGPSPFLRITVALPRLVAPARRL
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Known secondary structure (DSSP) STTSS


SGGGTTTSSSS
S






BSSS


S


S
GGG
 .........150.........160.........170.........180.........190.........200.........210
Sequence LEQGIRVAGLGTPSFAPYEANVDFEIRFMVDTDIVGCNWLELPAGKYALRLKEKATQCQLEADVLWSDVV
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Known secondary structure (DSSP) SSS


SSSSS
S



B



T

SS

TTS

STTS


B

STTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence SHPPEGPWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGA
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Known secondary structure (DSSP)
SSGGGG







SS



TTT

TTSSS
SSS




TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence KVQSYEKEEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVQTFPFLGRVAGLCSNIRDSSF
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Known secondary structure (DSSP)
SS

SSSTTTTTT
TTTT

SSBTT



 .........360.........370.........380.........390.........400.........410.........420
Sequence QSKQTGRRDTKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEHSIITDLQNGNDQTRRRLAVYC
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Known secondary structure (DSSP) TTT

SS



S

ST


TTSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence LKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMPVVKSEGGEDYT
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Known secondary structure (DSSP) TT


SSGGGT

STTTT
B





S





 .........500.........510.........520.........530.........540.........550.........560
Sequence GATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVR
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Known secondary structure (DSSP)


B





S
SSTT

GGG
TTTTTT



TTT
SSS

TTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence KGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTG
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Known secondary structure (DSSP)

STT


T
SSSS


 .........640.........650.........660.........670.........680.........690.........700
Sequence FGRQMIEKTKQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRL
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Known secondary structure (DSSP) S
TTTTSSS

BSS
S


TSSS
TT

 .........710.........720.........730.........740.........750.........760.........770
Sequence EFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVA
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Known secondary structure (DSSP) TTSSSSS



SSTTT
SSS
TS

 .........780.........790.........800.........810.........820.........830.........840
Sequence HAQDVISDLLCNRIDISQLVITKELTRAASDYAGKQAHVELAERMRKRDPGSAPSLGDRVPYVIISAAKG
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Known secondary structure (DSSP) TT


TTTT



TTTTTSS

S

SS
TTS


TTSB

S
T
 .........850.........860.........870.........880.........890.........900.........910
Sequence VAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLGLLAFAK
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Known secondary structure (DSSP) T
TTSS
T

B
TTTSTTS
STT




GGGS

 .........920.........930.........940.........950.........960.........970.........980
Sequence RRNCCIGCRTVLSHQGAVCEFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCP
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Known secondary structure (DSSP)


B
TTT

B
SSS
SS
STT
STTTS
SSS





TT
S
 .........990.........1000.........1010
Sequence IFYMRKKVRKDLEDQEQLLRRFGPPGPEAW
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Known secondary structure (DSSP) TTSS

SS
S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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