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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6tniA_

Fold library idPDB HeaderMoleculeTitle
c6tniA_3.40PDB header: dna binding proteinChain: A: PDB Molecule: uncharacterized protein;


Added to library: Sat Feb 22 08:30:04 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AVVTLLLEKIPEFFFDVVGTFGTNFPRLIVNQFKWLDGLLDSQDLVKKLMQMLSVSPVPIQHDIITSLPE
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Known secondary structure (DSSP)

SS
SSSSTTSGGGS

TTTSGGG


TTTTTTS
STTGGGTSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence ILEDSQQNEVARELSCLLKQGRRLTVPILDALSRLDLDAELLAKVRQSAMTIVPSVKLEDLPVVIKFILH
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Known secondary structure (DSSP) S
STTTSSSTTTT

SSTTS
SSGGGTTTTS
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence NVKAADAVEVISDLRKSLDLSSTSQNCVKLLFDVIKLAVRFQKDVSEAWIKAIENSTSVSDHKVLDLIVL
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Known secondary structure (DSSP) SSSS

TTT



TTGGGSSSTTTT

SSTTTGGGGT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LLIHSTNSKNRKQTEKVLRSKIRLGCMPEQLMQNAFQNHSMVIKDFFPSILSLAQTFLHSAHPAVVSFGS
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Known secondary structure (DSSP)
STTSSSSS

TS
TTTGGGTTTTTT
SS
TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence CMYKQAFAVFDSYCQQEVVCALVTHVCSGNETELDISLDVLTDLVILHPSLLLRYATFVKTILDSMQKLN
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Known secondary structure (DSSP) S
S
SSSSGGGTTTTGGGGGGTTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence PCQIRKLFYILSTLAFSQRQEGSYIQDDMHMVIRKWLSSSVPNHKQMGIIGAVTMMGSVALIECDGQLST
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Known secondary structure (DSSP) SST
TTTSSSSST



 .........430.........440.........450.........460.........470.........480.........490
Sequence LLDLVGFCCEQTPEVLALYYDELANLIEKQKGNLDLQLLDKFGKSLVEDFPNDFVVDLSPTVDGSFLFPV
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Known secondary structure (DSSP) SSSTS
SSS
SSTTGGGSTTSS


S
TTS
S

SSBT
 .........500.........510.........520.........530.........540.........550.........560
Sequence KSLYNLDEDETQGAIAINLLPLVSQKRVVSPICLSPCFRLLRLYTGEQNNGSLEEIDALLGCPLYLTDLE
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Known secondary structure (DSSP) TSSS
SBB



S

SSTTS




S
SSSSSTTSSSSTTTTSSSSS


BSB
 .........570.........580.........590.........600.........610.........620.........630
Sequence VEGKLDSLSKQEREFLCSLLFYALNWFREVVNAFCQQQDAEMKGKVLTRLQNITELQNVLGKCLAATPGY
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Known secondary structure (DSSP) S




BSS

SS

SS
TTSSS
 .........640.........650.........660.........670.........680.........690.........700
Sequence VPPPATFDSEAPAQLQSYRPYFRELDLEVFSVLHCGLLTLGPAELCFLLDDMCWKLEHVLTFSHLCQRSP
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Known secondary structure (DSSP)

TSSS




SSSGGGGTTTT
TTT




TTTTTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence KEVAVCVVKLLKPLCNHMENMHNYFQTVIPNQGVVDESGLNIQEYQLMSSCYHQLLLAFRLLFAWSGFSQ
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Known secondary structure (DSSP) TTTSSSTTTTTTSS
TT
T
TTTSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence HENSNLLRSALQVLADRLKPGETEFLPLEELISESFQYLLNFQASIPSFQCAFILTQVLMAISEKPMTGW
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Known secondary structure (DSSP) S

TTTS
TT
TT

TTTTT

STTTTTSSSTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence KREKMASLAKQFLCQSWMKPGGDREKGSHFNSALHTLLCVYLEHTDNILKAIEEISSVGVPELINSAKDG
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Known secondary structure (DSSP)
S
SST
STT
TTTTSSS

S
 .........920.........930.........940.........950.........960.........970.........980
Sequence CSSTYPTLSRQTFPVFFRVMMAQLESSVKSIPAGKPSDSGEVQLEKLLKWNIAVRNFHILINLVKVFDSR
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Known secondary structure (DSSP) GGG
STTGGGGTTSSS

SSSTTT

S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PVLSICLKYGRLFVEAFLKLAMPLLDHSFKKHRDDVQSLLKTLQLSTRQLHHMCGHSKIHQDLGLTNHVP
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Known secondary structure (DSSP) SGGGSTT
GGG
TTSTTS
TTTS
STT
 .........1060.......
Sequence LLKKSLEQFVYRVKAML
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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