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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6tnfA_

Fold library idPDB HeaderMoleculeTitle
c6tnfA_3.80PDB header: dna binding proteinChain: A: PDB Molecule: fancd2;


Added to library: Sat Feb 22 08:30:54 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GVFEELLRTSGIILKVGEGQNEIAVDQTAFQKKLRVALEKHPSYPGVVNEFISGLESHIKDRSQFKNCLL
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Known secondary structure (DSSP)

T



SSSS



S

TTTTTTSS
SSTGGGSTTTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PCTPARCESLIKLLLGIKILQPAVVTLLLEKIPEFNFPRLIVNQFKWLDGLLDSQDLVKKLMQMLSVSPV
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Known secondary structure (DSSP)








TTTTT


SSTTT

TTTT



S
TTSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PIQHDIITSLPEILEDSQQNEVARELSCLLKQGRRLTVPILDALSRLDLDAELLAKVRQSAMTIVPSVKL
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Known secondary structure (DSSP) TTTSS
SSSTTT
STT

SSTTSTTSSS

T
 .........220.........230.........240.........250.........260.........270.........280
Sequence EDLPVVIKFILHNVKAADAVEVISDLRKSLDLSSTSQNCVKLLFDVIKLAVRFQKDVSEAWIKAIENSTS
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Known secondary structure (DSSP) TSS

STT
S


TTTTSTTTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence VSDHKVLDLIVLLLIHSTNSKNRKQTEKVLRSKIRLGCMPEQLMQNAFQNHSMVIKDFFPSILSLAQTFL
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Known secondary structure (DSSP) TTS

TTSS
SSTTTTTSS
TTTSSTTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence HSAHPAVVSFGSCMYKQAFAVFDSYCQQEVVCALVTHVCSGNETELDISLDVLTDLVILHPSLLLRYATF
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Known secondary structure (DSSP) S

SS
TTTTTTTTSS

SSTTTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence VKTILDSMQKLNPCQIRKLFYILSTLAFSQRQEGSYIQDDMHMVIRKWLSSSVPNHKQMGIIGAVTMMGS
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Known secondary structure (DSSP) TTT





TTTTT
STTSTTS

TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence VALIECDGQLSTLLDLVGFCCEQTPEVLALYYDELANLIEKQKGNLDLQLLDKFGKSLVEDFPNDFVVDL
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Known secondary structure (DSSP)


TTT
TTTTTS
TTTTTTTTTTTTTTT



 .........570.........580.........590.........600.........610.........620.........630
Sequence SPTVDGSFLFPVKSLYNLDEDETQGAIAINLLPLVSQKRVVSPICLSPCFRLLRLYTGEQNNGSLEEIDA
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Known secondary structure (DSSP) SS


S

SS
T



S
SS





T







SSTTTTS
TTTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence LLGCPLYLTDLEVEGKLDSLSKQEREFLCSLLFYALNWFREVVNAFCQQQDAEMKGKVLTRLQNITELQN
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Known secondary structure (DSSP) S




S
SSTTTT

SSSSTS


SS
 .........710.........720.........730.........740.........750.........760.........770
Sequence VLGKCLAATPGYVPPPAQLQSYRPYFRELDLEVFSVLHCGLLTLGPAELCFLLDDMCWKLEHVLTFSHLC
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Known secondary structure (DSSP) SS








STTTTSS



TTTTS





SSTTTTTT


TTGG
 .........780.........790.........800.........810.........820.........830.........840
Sequence QRSPKEVAVCVVKLLKPLCNHMENMHNYFQTVIPNQGVVDESGLNIQEYQLMSSCYHQLLLAFRLLFAWS
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Known secondary structure (DSSP) GS
TTTTTTTTS
TTTTS

TTTTTS
T
 .........850.........860.........870.........880.........890.........900.........910
Sequence GFSQHENSNLLRSALQVLADRLKPGETEFLPLEELISESFQYLLNFQASIPSFQCAFILTQVLMAISEKP
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Known secondary structure (DSSP) TTSSSTTGGGTTSSSSS

S

S
TTGGGGGT
S
T

S
 .........920.........930.........940.........950.........960.........970.........980
Sequence MTGWKREKMASLAKQFLCQSWMKPKGSHFNSALHTLLCVYLEHTDNILKAIEEISSVGVPESRQTFPVFF
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Known secondary structure (DSSP)

TTTS






SSSSS
TT

TTS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence RVMMAQLESSVKSIPGEVQLEKLLKWNIAVRNFHILINLVKVFDSRPVLSICLKYGRLFVEAFLKLAMPL
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Known secondary structure (DSSP)


TTTS
TTTTTTT
 .........1060.........1070.........1080.........1090.........1100.........1110......
Sequence LDHSFKKHRDDVQSLLKTLQLSTRQLHHMCGHSKIQDLGLTNHVPLLKKSLEQFVYRVKAMLAFNH
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Known secondary structure (DSSP) TTTTTTT
SSTTTT

TT


SS
TTTTTTTTT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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