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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c6tdaS_

Fold library idPDB HeaderMoleculeTitle
c6tdaS_15.00PDB header: dna binding proteinChain: S: PDB Molecule: nuclear protein sth1/nps1;


Added to library: Sat Mar 21 09:43:17 2020
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KPRSSAQLEQLLYRYRAIQNHPKENKLEIKAIEDTFRNISRDQDIYETKLDTLRKSIDKGFQYDEDLLNK
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Known secondary structure (DSSP)


STTTTS
SS
S

SS



TTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence HLVALQLLEKDTDVPDYKPIKISADFNAKAKSLGLESKFSNATKTALGDPDTEIRISARISNRINELERL
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Known secondary structure (DSSP) TT











SSSSGGGGTTSSS


SS
STTTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence PANLGTYSLDDCLEFITKDDLSSRMDTFKIKALVELKSLKLLTKQKSIRQKLINNVASQAHHNIPYLRDS
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Known secondary structure (DSSP)
TT




TTGGGGT

TTS

TT
SSTTTTSSSTTSSS
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence PFTAAAQRSVQIRSKVIVLHLQKINSIIDFIKERQSEQWSRQERCFQFGRLGASLHNQMEKDEQKRLDQT
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Known secondary structure (DSSP) TTS









 .........290.........300.........310.........320.........330.........340.........350
Sequence KDTRITQLLRQYYEVAHRIKEKIDKQPSILVGGTLKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQS
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Known secondary structure (DSSP)

T
S




S

TT

SS


TT




SSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence ISLITYLYEVKKDIGPFLVIVPLSTITNWTLEFEKWAPSLNTIIYKGTPNQRHSLQHQIRVGNFDVLLTT
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Known secondary structure (DSSP) S





TTS
TTS


SSTTT


S
 .........430.........440.........450.........460.........470.........480.........490
Sequence YEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTPLQNNLPELWALLNFVL
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Known secondary structure (DSSP) TTTS

SS
GGGG

TTS


S
SS
S
TT
TT
 .........500.........510.........520.........530.........540.........550.........560
Sequence PKIFNSAKTFEDWFNTPEETLLIIRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQM
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Known secondary structure (DSSP) TTSTTTGGGST


TTT


T


S




B

 .........570.........580.........590.........600.........610.........620.........630
Sequence LKHNANKIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASGHRVLMFFQMTQ
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Known secondary structure (DSSP) TTT



S

S
TT
SS
TTTTTSB


S
S
 .........640.........650.........660.........670.........680.........690.........700
Sequence VMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTD
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Known secondary structure (DSSP) TT




TTS
SST
TT
S

STT
TT




S


S

 .........710.........720.........730.........740.........750.........760.........770
Sequence WNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQKLDIDGKVILDDDELNDTLARSADEKI
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Known secondary structure (DSSP) S
GGGG
TT

S

SSSTTT



SS
 .........780...
Sequence LFDKIDKERMNQE
Predicted secondary structure

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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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